1 / 6

C-MORE user network to share bioinformatics skills and experience

C-MORE user network to share bioinformatics skills and experience . Lydia Baker Café call March 2013. US-EU workshop on bioinformatics. Microb 3: Biodiversity, Bioinformatics, Biotechnology A project funded by the EU Seventh Framework Programme (7FP) for Research Goals:

foy
Download Presentation

C-MORE user network to share bioinformatics skills and experience

An Image/Link below is provided (as is) to download presentation Download Policy: Content on the Website is provided to you AS IS for your information and personal use and may not be sold / licensed / shared on other websites without getting consent from its author. Content is provided to you AS IS for your information and personal use only. Download presentation by click this link. While downloading, if for some reason you are not able to download a presentation, the publisher may have deleted the file from their server. During download, if you can't get a presentation, the file might be deleted by the publisher.

E N D

Presentation Transcript

  1. C-MORE user network to share bioinformatics skills and experience Lydia Baker Café call March 2013

  2. US-EU workshop on bioinformatics • Microb 3: Biodiversity, Bioinformatics, Biotechnology • A project funded by the EU Seventh Framework Programme (7FP) for Research • Goals: • Develop innovative bioinformatic approaches and a legal framework to make large-scale data on marine viral, bacterial, archaeal and protistangenomes and metagenomes accessible for marine ecosystems biology • Define new targets for biotechnological applications.

  3. main aims of the Marine Bioinformatic "Marine Omics" training • To bring together young scientists in a forum that will set the groundwork for future overseas collaborative interactions. • To acquire the skills-set necessary for proper experimental design as well as analyzing diversity, (meta)genomics, (meta)transcriptomics, (meta)proteomics, (meta)metabolomics, and associated environmental contextual data from the marine environment.

  4. Tools • Beginning Linux computing • Multiple alignment tools • MAFFT, muscle, clustalw, and more • Sequence identity tools and visualization • BLAST, ARB, MAFFT, MG-RAST, CAMERA • ITOL, phylodendron, MEGA-X • Analysis tools • MG-RAST, Qiime, Mothur • Statistics tools • Unifrac, Fastfrac, Matlab, R

  5. Proposed dissemination • Create a network of C-MORE students, post-docs, and professors to teach next-generation • Goal: Peer to peer information exchange • Pre-seminar survey to see where focus should be spent and what expertise we have within the C-MORE community • A one hour seminar on what tools were presented during US-EU bioinformatics training, how they are applied, and how to get more information.

  6. Proposed dissemination • Continued dissemination: • Smaller post-seminar meetings for persons interested in learning certain skills • Voluntary participation in website listing who in C-MORE is a reference for which topics/skills

More Related