'Expressed genes' presentation slideshows

Bioinformatics

Bioinformatics. Expression profiling and functional genomics Part I: Preprocessing Ad 29/10/2006. http://www.esat.kuleuven.ac.be/~kmarchal/ Course material: course notes + powerpoint files Exercises. Overview. MICROARRAY PREPROCESSING Gene expression Omics era Transcript profiling

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Introduction to Microarry Data Analysis BMI 730

Introduction to Microarry Data Analysis BMI 730. Kun Huang Department of Biomedical Informatics Ohio State University. Introduction to Microarray Software and Databases Data Visualization and Normalization. What is microarray?

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Functional Enrichment Analysis & Candidate Gene Ranking

Functional Enrichment Analysis & Candidate Gene Ranking. Anil Jegga Biomedical Informatics. Contact Information: Anil Jegga Biomedical Informatics Room # 232, S Building 10th Floor CCHMC Homepage: http://anil.cchmc.org Tel: 513-636-0261 E-mail: anil.jegga@cchmc.org.

682 views • 52 slides

Bioinformatics

Bioinformatics. Microarray Analysis: Clustering 27/11/2006. Preprocessing. Array by array approach. ANOVA based. Background corr. Background corr. Log transformation. Log transformation. Filtering. Filtering. normalization. Linearisation. Ratio. Test statistic (T-test).

1.28k views • 50 slides

Bioinformatics

Bioinformatics. Microarray Analysis: Clustering 27/11/2006. Preprocessing. Array by array approach. ANOVA based. Background corr. Background corr. Log transformation. Log transformation. Filtering. Filtering. normalization. Linearisation. Ratio. Test statistic (T-test).

608 views • 50 slides

Making Sense Out of Transcriptome Integrative Bioinformatic Approaches

561 views • 49 slides

Gene Expression

Gene Expression. Expressed genes are those that have been transcribed. A gene expression profile of a cell is the snapshot of which genes are expressed in that cell at the time the sample was taken. Knowing which genes are expressed in a cell allows: identification of new genes or transcripts

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Functional Genomics

Functional Genomics. Global Gene Expression. A global picture of gene expression A pathway (inflammation) can be studied Study under a specific condition Compare, experimental with control Both are simultaneously studied on same array = two experiments on one array.

428 views • 28 slides

A Systematic approach to the Large-Scale Analysis of Genotype-Phenotype correlations

A Systematic approach to the Large-Scale Analysis of Genotype-Phenotype correlations. Paul Fisher Dr. Robert Stevens Prof. Andrew Brass. Genotype. The entire genetic identity of an individual that does not show any outward characteristics, e.g. Genes, mutations. Genes. DNA. Mutations.

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A Bioinformatics Meta-analysis of Differentially Expressed Genes in Colorectal Cancer

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NETWORK ANALYSIS: A FOCUS ON GENETIC NETWORKS

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Functional Genomics in Evolutionary Research

Functional Genomics in Evolutionary Research. What Is Microarray Technology?. High throughput method for measuring simultaneously, mRNA abundances for thousands of genes. Thousands of probes or features adhered to a solid substrate at known x,y coordinates. Probes :

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312 views • 17 slides

Expressed sequence tags

340 views • 17 slides

Data Analysis Project

Data Analysis Project. Advanced Bioinformatics BIF-30806 2013. Set Up. Basic and Advanced Project Available data sets Deliverables Literature Groups Schedule week 3 & 4. Purpose. Build software pipeline to perform a transcriptome analysis

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A Tale of Three Inferences

A Tale of Three Inferences. Models of transcription and their consequences Philip Benfey, Ken Birnbaum, Dennis Shasha. What is the Logic of Transcription?. Known: transcription factors bind to small subsequences of DNA, perhaps in a statistical mechanical (hence concentration dependent) way.

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Interactive Exploration of Coherent Patterns in Time-series Gene Expression Data

University at Buffalo. The State University of New York. 08.25.03. Interactive Exploration of Coherent Patterns in Time-series Gene Expression Data. Daxin Jiang Jian Pei Aidong Zhang Computer Science and Engineering University at Buffalo. Microarray Technology.

219 views • 12 slides

Case study: Saccharomyces cerevisiae grown under two different conditions

Oryza group Arjan , Claire, Robert & Ruud. Case study: Saccharomyces cerevisiae grown under two different conditions RNAseq data plataform: Illumina

189 views • 7 slides

C5 : Software for Microarray Analysis ??? ? ??? ????? ??? ( November/2005 )

C5 : Software for Microarray Analysis ??? ? ??? ????? ??? ( November/2005 ). MA-Plot and Other Program Listing. compustt spot features maplot matlab MA plot linearfit normalization geneUD up/down genes cluster K-means Algo. bestBC feature selection

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Learning where to look: Reducing the size of the haystack Heather Amthauer and Costas Tsatsoulis

I. Search form. Index of genes based on ontologies. Process query. Enter information about possible function. Gene Ontology. Indexer. List of similar genes. Default: Distance. KEGG. II. Process list. Results: Rules generated Areas to look for genetic networks. BioCarta.

109 views • 1 slides