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The Species 2000 Protocols for a Distributed System

The Species 2000 Protocols for a Distributed System. by Yuri Roskov, Species 2000 Secretariat. 20th International CODATA Conference, Session K2, 25 October 2006, Beijing. Species 2000 is a federation of taxonomic databases around the world

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The Species 2000 Protocols for a Distributed System

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  1. The Species 2000 Protocols for a Distributed System by Yuri Roskov, Species 2000 Secretariat 20th International CODATA Conference, Session K2, 25 October 2006, Beijing

  2. Species 2000 is a federation of taxonomic databases around the world • We are working in partnership with ITIS(Integrated Taxonomic Information System, N America) on the Catalogue of Life • Catalogue of Life is a taxonomic checklist of all know species of the Earth 20th International CODATA Conference, Session K2, 25 October 2006, Beijing

  3. The Catalogue of Lifeis available as • Dynamic Checklist is an array of on-line taxonomic databases which linked to the common access system operated by SPICE software • Annual Checklist is a fixed assembly of taxonomic databases as an annual edition of single database on CD and in the web 20th International CODATA Conference, Session K2, 25 October 2006, Beijing

  4. Dynamic Checklist (2006) www.sp2000.orgor http://spice.sp2000.org • 26 databases (including European Hub) • covers 450.000 species • Annual Checklist (2006) www.sp2000.org or http://annual.sp2000.org/2006 • 37 global species databases • covers 880.000 species (over 1.050.000 in 2007) 20th International CODATA Conference, Session K2, 25 October 2006, Beijing

  5. Standard Dataset, • version 3.2 of December 2004 • is available at www.sp2000.org • The standard dataset has described 10 field groups related to each species: • Accepted scientific name linked to References, • Synonym(s) linked to Reference(s), • Common name(s) linked to Reference(s) • Latest taxonomic scrutiny • Database title • Additional data/Comments • Family name • Classification above family up to highest taxon • Distribution data • Reference(s) 20th International CODATA Conference, Session K2, 25 October 2006, Beijing

  6. Roadmap to database connection 1. Collecting metadata on each database via Sp2000 Questionnaire 2. Open on-line access to the database 3. Peer review process: 3 independent taxonomic reviews plus technical report by the Secretariat 4. Joining Species 2000 (membership of the international project) 5. Access agreement (permission for Species 2000 to include data into the Catalogue of Life) 20th International CODATA Conference, Session K2, 25 October 2006, Beijing

  7. Roadmap to database connection • for Dynamic Checklist • 6. Connection to one of the Species 2000 hubs via SPICE wrapper (incl. mapping fields and wrapper programming) • 7. Testing the connection to the hub (technical tests & content verification) • for Annual Checklist • 8. Download from individual databases for the Annual Checklist assembly 20th International CODATA Conference, Session K2, 25 October 2006, Beijing

  8. Dynamic Checklist connection, Architecture # 1 interface cache SPICE wrapper wrapper GSD1 wrapper wrapper GSD4 GSD3 GSD2 20th International CODATA Conference, Session K2, 25 October 2006, Beijing

  9. Annual Checklist assembly (present procedure) Luvie Paglinawan, Philippines Annual Checklist

  10. Annual Checklist assembly (present procedure) ITIS: North American species

  11. Scarabaeidae DB AlgaeBase ILDIS Annual Checklist assembly (present procedure) Global Species Databases Parhost ITIS: North American species

  12. Scarabaeidae DB AlgaeBase ILDIS Annual Checklist assembly (present procedure) Global Species Databases Parhost ITIS: North American species

  13. Scarabaeidae DB AlgaeBase Parhost ILDIS The Annual Checklist 2006 Annual Checklist assembly (present procedure) Global Species Databases ITIS: North American species

  14. Scarabaeidae DB AlgaeBase Parhost ILDIS The Annual Checklist 2006 Annual Checklist assembly (present procedure) Global Species Databases ITIS: North American species

  15. Scarabaeidae DB Scarabaeidae DB RBG Checklist ChiloBase WTaxa AlgaeBase AlgaeBase SysMyr Parhost Parhost ILDIS ILDIS The Annual Checklist 2007 Annual Checklist assembly (present procedure) Global Species Databases ITIS: North American species

  16. CoL Management classification Points of connection GSD internal classification Catalogue of Life classification

  17. Species 2000: Architecture # 2 Regional hubs around the World EuroHub EuroHub ITIS ChinaHub 20th International CODATA Conference, Session K2, 25 October 2006, Beijing

  18. Thank you! y.roskov@reading.ac.uk School of Biological Sciences Plant Sciences Building The University of Reading Reading RG6 6AS, United Kingdom

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