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Gas and Supercritical Fluid Chromatography. Lecture Date: April 7 th , 2008. Gas and Supercritical Fluid Chromatography. Outline Brief review of theory Gas Chromatography Supercritical Fluid Extraction Supercritical Fluid Chromatography Reading (Skoog et al.)

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gas and supercritical fluid chromatography
Gas and Supercritical Fluid Chromatography

Lecture Date: April 7th, 2008

gas and supercritical fluid chromatography2
Gas and Supercritical Fluid Chromatography
  • Outline
    • Brief review of theory
    • Gas Chromatography
    • Supercritical Fluid Extraction
    • Supercritical Fluid Chromatography
  • Reading (Skoog et al.)
    • Chapter 27, Gas Chromatography
    • Chapter 29, Supercritical Fluid Chromatography
  • Reading (Cazes et al.)
    • Chapter 23, Gas Chromatography
    • Chapter 24, Supercritical Fluid Chromatography
gc and sfc very basic definitions
GC and SFC: Very Basic Definitions
  • Gas chromatography – chromatography using a gas as the mobile phase and a solid/liquid as a stationary phase
    • In GC, the analytes migrate in the gas phase, so their boiling point plays a role
    • GC is generally applicable to compounds with masses up to about 500 Da and with ~60 torr vapor pressure at room temp (polar functional groups are trouble)
  • Supercritical fluid chromatography – chromatography using a supercritical fluid as the mobile phase and a solid/liquid as a stationary phase
    • In SFC, the analytes are solvated in the supercritical fluid
    • SFC is applicable to a much wider range of molecules
review of chromatography
Review of Chromatography
  • Important concepts/equations to remember:


Retention volume:

  • Column/separation performance:


  • Linear velocity of mobile phase:
review of chromatography5
Review of Chromatography
  • Terminology and equations from Skoog:
gc theory
GC Theory
  • Mobile-phase flow rates are much higher in GC (pressure drop is much less for a gas)
  • The effect of mobile-phase flow rate on the plate height (H) is dramatic
    • Lower plate heights yield better chromatography
    • However, much longer columns can be used with GC
gc instrumentation
GC Instrumentation
  • Basic layout of a GC:



Carrier Gas



  • See pg 703 of Skoog et al. for a similar diagram
gc instrumentation8
GC Instrumentation
  • A typical modern GC – the Agilent 6890N:

Diagram from Agilent promotional literature.

gc instrumentation9
GC Instrumentation
  • Typical carrier gases (all are chemically inert): helium, nitrogen and hydrogen. The choice of gas affects the detector.
  • Injectors: most desirable to introduce a small “plug”, volatilize the sample evenly
    • Most samples introduced in solution: microflash injections “instantly” volatilize the solvent and analytes and sweep them into the column
  • Splitters: effectively dilute the sample, by splitting off a portion of it (up to 1:500)
  • Ovens: Programmable, temperature ranges from 77K (LN2) up to 250 C.
  • Detectors: wide variety, to be discussed shortly…
headspace gc
Headspace GC


  • A very useful method for analyzing volatiles present in non-volatile solids and liquids
  • Sample is equilibrated in a sealed container at elevated temperature
  • The “headspace” in the container is sampled and introduced into a GC



columns for gc
Columns for GC
  • Two major types of columns used in GC
    • Packed
    • Open
  • Open columns work better at higher mobile phase velocities
columns for gc12
Columns for GC
  • Open tubular columns: most common, also known as capillary columns (inner diameters of <0.25 mm)
    • up to 150 m long
    • 1000-3000 plates/m
    • pressure limits particle size in packed columns
    • No “A” term (Eddy or multipath) in van Deemter equation
    • N up to 600000

A Phenomenex Zebron capillary GC column

  • Packed columns: contain packing, like HPLC columns
    • typical particle sizes 100-600 um
    • 3 m long
    • 1000-3000 plates/m
    • difficult to overload
    • N up to 12000
types of columns for gc
Types of Columns for GC
  • GLC: Gas-liquid chromatography (partition) – most common
  • GSC: Gas-solid chromatography (adsorption)
  • FSWC: fused-silica wall-coated open tubular columns, very popular in modern applications (a form of WCOT column)
  • WCOT (GLC): wall-coated open tubular – stationary phase coated on the wall of the tube/capillary
  • SCOT (GLC): support-coated open tubular – stationary phase coated on a support (such as diatomaceous earth)
    • More capacity that WCOT
  • PLOT (GSC): porous-layer open tubular
  • Packed columns
mobile phases for gc
Mobile Phases for GC
  • Common mobile phases:
    • Hydrogen (fast elution)
    • Helium
    • Argon
    • Nitrogen
    • CO2
  • The longitudinal diffusion (B) term in the van Deemter equation is important in GC
    • Gases diffuse much faster than liquids (104-105 times faster)
  • A trade-off between velocity and H is generally observed
    • This is equivalent to a trade-off between analysis time and separation efficiency
columns and stationary phases for gc
Columns and Stationary Phases for GC
  • Modern column design emphasizes inert, thermally stable support materials
    • Capillary columns are made of glass or fused silica
  • The stationary phase is designed to provide a k and  that are useful. Polarities cover a wide range (next slide).
    • Stationary phases are usually a uniform liquid coating on the wall (open tubular) or particles (packed)
    • When the polarity of the stationary phase matches that of the analytes, the low-boilers come off first…
    • Bonded/cross-linked phases – designed for more robust life, less “bleeding” – often these phases are the result of good polymer chemistry
  • Adsorption onto silicates (via free silanol groups) on the silica column itself: avoided by deactivation reactions, usually leaving an OCH3 group instead.
stationary phases for gc
Stationary Phases for GC
  • Target: uniform liquid coating of thermally-stable, chemically inert, non-volatile material on the inside of the column or on its particles.
  • Polysiloxanes
    • Polydimethylsiloxane
      • (R = CH3)
    • phenyl polydimethylsiloxane
      • (R = C6H5, CH3)
    • trifluoropropyl polydimethylsiloxane
      • (R = C3H6CF3, CH3)
    • cyanopropyl polydimethylsiloxane
      • (R = C3H6CN, CH3)
    • polyethylene glycol
  • Chiral
    • amino acids, cyclodextrins

Backbone structure of polydimethylsiloxane (PDMS)

structure of polyethylene glycol (PEG)

common stationary phases for gc
Common Stationary Phases for GC




  • High-temperature columns work to 400C, include Agilent’s DB-1ht (100% polydimethylsiloxane), DB-5ht (5% phenyl).
temperature effects in gc
Temperature Effects in GC
  • Temperature programming can be used to speed/slow elution, help handle compounds with a wide boiling point range
comparison of gc detectors
Comparison of GC Detectors
  • See pg. 793 of Skoog et al. 6th Ed.
gc detectors fid
GC Detectors: FID
  • The flame ionization detector (FID), the most common and useful GC detector
  • Process: The column effluent is mixed with hydrogen and air and is ignited. Organic compounds are pyrolyzed to make ions and electrons, which conduct electricity through the flame (current is detected)
  • Advantages: sensitive (10-13 g), linear all the way up to 10-4 g), non-selective
  • Disadvantages: Destructive, certain compounds (non-combustible gases) don’t give signals in the FID.
gc detectors thermal conductivity
GC Detectors: Thermal Conductivity
  • Thermal conductivity detector (TCD): a non-selective detector like the FID
  • Also known as the katherometer (catherometer) or “hot wire”
    • Works by detecting the changes in thermal conductivity (also the specific heat) of a gas containing an analyte
    • About 1000x < sensitive than FID
    • Non-destructive
gc detectors electron capture detector
GC Detectors: Electron Capture Detector
  • Electron capture: selectively detects halogen-containing compounds (e.g. pesticides)
    • Works by ionizing a sample using a radioactive material (63Ni). This material ionizes the carrier gas – but this ionization current is quenched by a halogenated compound
    • Detects compounds via electron affinity – e.g. I (most sensitive) > Br > Cl > F
gc detectors other
GC Detectors: Other
  • Atomic emission detector: plasma systems (like ICP, but often using microwaves) – elemental analysis
  • Sulfur chemiluminescence detector (SCD): reaction between sulfur and ozone, follows an FID-like process
  • Thermionic detector: like an FID, optimized and electrically charged to form a low-temp (600-800 C) plasma on a special bead. Leads to large ion currents for phosphorous and nitrogen – a selective detector that is 500x as sensitive as FID
  • Flame photometric detector: specialized form of UV emission from flame products
  • Photoionization detector: UV irradiation used to ionize analytes, detected by an ion current.
  • And, of course, the mass spectrometer (MS)…
examples of gc detection petroleum analysis
Examples of GC Detection: Petroleum Analysis
  • An example of atomic spectroscopy, using microwave-induced plasma (MIP), to selectively detect lead (Pb) containing compounds in gasoline
  • See pg 710 of Skoog for an example of oxygen (O) and carbon (C) detection for separating hydrocarbons…
examples of ecd detection pesticide analysis
Examples of ECD Detection: Pesticide Analysis

Data from Agilent,

interpretation of gc data
Interpretation of GC Data
  • Common use: develop a method to separate compounds of interest by spiking, and use retention times to determine whether a compound is present or not in unknowns
    • Watch out for compounds with the same retention time!
    • GC can function as a negative test – e.g. “rule out the presence of ethyl acetate in my sample”….
  • Relative retention time:
  • Quantitative – Kovats’ retention index (I) – based on normal alkanes
    • the retention index of these compounds is independent of temperature and packing
    • I = 100z (z is the number of carbons in a compound)
    • Relative retention index:
purge and trap gc for volatile organic compounds
Purge and Trap GC for Volatile Organic Compounds
  • Invented 30 years ago by T. A. Bellar at the US EPA
  • Principle:
    • Inert gas is bubbled through an aqueous sample
    • Gas carries analytes to headspace above sample, through to a sorbent trap
    • After a collection period, the sorbent trap is heated to desorb the analytes
    • The desorbed analytes are injected into a GC
  • Results:
    • ppb detection of VOC’s like benzene, decane, halomethanes, etc… in water samples
  • Commercialized by Teledyne Tekmar (e.g. the Velocity XPT) and used worldwide
  • Legally-mandated for water analysis in many areas

See C&E News December 12th, 2005, page 28, for more info on the 30th anniversary of Purge and Trap GC

chemical derivatization for gc analysis
Chemical Derivatization for GC Analysis
  • GC is only applicable to lower molecular weight compounds with significant (> ~60 torr) volatility
    • Polar functional groups reduce volatility
    • For other compounds, another separations approach can be used (LC, etc…) or derivatization can be explored
  • Derivatization: chemical reaction(s) that modify an analyte so that it is easier to separate or detect
  • Advantages:
    • Can lower LOD (increase sensitivity)
    • Can stabilize heat-sensitive compounds
    • Can avoid tailing in GC caused by on-column reactions (carbonyl, amino, imino)
    • Can improve the separation of closely-related molecules
  • Disadvantage:
    • Requires running a reaction, with all its complexities
chemical derivatization for gc analysis29
Chemical Derivatization for GC Analysis
  • A typical derivitization reactions – silylation of an alcohol:
  • Common derivatives that reduce polarity:
  • Other derivatives contain halogens for ECD detection

S. Ahuja, “Derivatization for Gas and Liquid Chromatography”, in Ultratrace Analysis of Pharmaceuticals and Other Compounds of Interest, Wiley, 1986.

applications of derivatization and gc in doping
Applications of Derivatization and GC in Doping
  • Example: derivatization of androgens (like testosterone) for GC-MS analysis. Detection limits can be as low as 0.2 ng/mL
  • In one procedure, derivitization with TMS is used in conjunction with a series of pretreatment and extraction steps, followed by GC-MS:

K. Shimada , K. Mitamura, T. Higashi, J. Chrom. A., 935, 2001, 141–172.

hyphenation of gc and ms
Hyphenation of GC and MS
  • The first useful “hyphenated” method?
  • Continuous monitoring of the column effluent by a mass spectrometer or MSD
  • Very easy to interface – capillary GC columns have low enough flow rates, and modern MS systems have high enough pumping rates, that GC effluent can be fed directly into the ionization chamber of the MS (for EI or CI, etc…)
    • Larger columns require a “jet separator”
  • Most common systems use quadrupole or ion trap mass analyzers (MSD)
supercritical fluids
Supercritical Fluids
  • Phase diagrams show regions where a substance exists in a certain physical state
  • Beyond the “critical point”, a gas cannot be converted into the liquid state, no matter how much pressure is applied!
supercritical fluids33
Supercritical Fluids
  • Supercritical properties of CO2
  • The fluid – intermediate between a liquid and a gas
  • Obtained in a not-so-sudden manner (there is no real transition)
supercritical fluids34
Supercritical Fluids
  • Photos of CO2 as it goes from a gas/liquid to a supercritical fluid






Increasing temp

Images from

extractions with supercritical fluids
Extractions with Supercritical Fluids
  • Why use supercritical fluid extraction (SFE)?
  • Supercritical fluids can solvate just as well as organic solvents, but they have these advantages:
    • Higher diffusivities
    • Lower viscosities
    • Lower surface tensions
    • Inexpensive
    • Pure
    • Easy to dispose of….
  • Basic utility – many of the same features apply to SFC, so we introduce them here with SFE.
extractions with supercritical fluids36
Extractions with Supercritical Fluids
  • Pure CO2 is able to extract a wide range of non-polar and moderately polar analytes.
  • Modifiers (such as methanol) at v/v% of 1-10% can be used to help solubilize polar compounds.
  • Other supercritical fluids can be used (note that NH3 is reactive and corrosive, while N2O and pentane are flammable)

See S. B Hawthorne, Anal. Chem., 62, 633A (1990).

some uses of sfe
Some Uses of SFE
  • Environmental analysis:
    • total petroleum hydrocarbons
    • polyaromatic hydrocarbons
    • organochloropesticides in soils
  • Food industry:
    • Extraction of fats
    • Extraction of caffeine
  • Density-stepping SFE – used as a form of “mini-chromatography”

See M. McHugh and V. Krukonis, Supercritical Fluid Extraction: Principles and Practice, Butterworth, Stoneham, MA, 1987.

supercritical fluid chromatography sfc
Supercritical Fluid Chromatography (SFC)
  • SFC is the next logical step from SFE
  • A supercritical fluid is used as the mobile phase – hardware is otherwise similar to GC.
control of pressure in sfc
Control of Pressure in SFC
  • Pressure affects the retention (capacity) factor k
  • Why? The density of the SF mobile phase increases with more pressure
  • More dense mobile phase means more solvating power (more molecules)
  • More solvating power means faster elution times
  • Changing the pressure in SFC is somewhat analogous to changing the solvent gradient in LC
detectors for sfc
Detectors for SFC
  • Detectors are generally similar to those used in GC and LC
  • Major advantage of SFC over HPLC: SFC can use the “universal” FID as a detector
  • SFC can also use UV, IR, and fluorescence detectors
  • SFC is compatible with MS hyphenation
applications of sfc
Applications of SFC
  • Why use SFC over other techniques? Consider speed and capability as well as expense
study problems and further reading
Study Problems and Further Reading
  • For more information about SFC, see:
    • M. McHugh and V. Krukonis, Supercritical Fluid Extraction: Principles and Practice, Butterworth, Stoneham, MA, 1987.
  • Study problems:
    • 27-1, 27-12
    • 29-3, 29-4
further reading
Further Reading

M. McHugh and V. Krukonis, Supercritical Fluid Extraction: Principles and Practice, Butterworth, Stoneham, MA, 1987.