'Rna seq' presentation slideshows

General considerations for RNA- seq quantification for differential expression or how to count.

General considerations for RNA- seq quantification for differential expression or how to count. Ian Dworkin @ IanDworkin. Monday, August 17 th 2015. Overview of lecture today and tomorrow. Today The absolute basics of experimental design. Overview of RNAseq pipelines.

1.12k views • 81 slides

Modeling Protein Structures and Gene Regulatory Networks by Mining Protein and RNA-Seq Data

Modeling Protein Structures and Gene Regulatory Networks by Mining Protein and RNA-Seq Data. Jianlin Jack Cheng, PhD Computer Science Department University of Missouri, Columbia March 7, 2012. Two Challenges. Protein Structure Modeling Gene Regulatory Network Modeling. The Genomic Era.

709 views • 56 slides

Introduction to Next-Generation Sequencing Data and Related Bioinformatic Analysis

Introduction to Next-Generation Sequencing Data and Related Bioinformatic Analysis. Han Liang, Ph.D. Department of Bioinformatics and Computational Biology 3/25/2014 @ Rice University. Outline. History NGS Platforms Applications Bioinformatics Analysis Challenges. Central Dogma.

788 views • 51 slides

620 views • 47 slides

High throughput expression analysis using RNA sequencing ( RNAseq )

High throughput expression analysis using RNA sequencing ( RNAseq ). June 18, 2019. Lecture objectives. Theory and practice of RNA sequencing (RNA- seq ) analysis Rationale for sequencing RNA Challenges specific to RNA- seq Types of libraries for RNA- seq Sequencing coverage (depth)

1.15k views • 41 slides

Canadian Bioinformatics Workshops

Canadian Bioinformatics Workshops. www.bioinformatics.ca. Module #: Title of Module. 2. RNA- S eq Module 2 Alignment and Visualization ( lecture). Malachi Griffith, Obi Griffith, Fouad Yousif Informatics for RNA-seq Analysis June 16 - 17, 2016. Learning objectives of the course.

569 views • 40 slides

Genomics and High Throughput Sequencing Technologies: Applications

Genomics and High Throughput Sequencing Technologies: Applications. Jim Noonan Department of Genetics. Outline. Personal genome sequencing. Rationale: understanding human disease Variant discovery and interpretation Genome reduction strategies ( exome sequencing ).

657 views • 40 slides

Canadian Bioinformatics Workshops

Canadian Bioinformatics Workshops. www.bioinformatics.ca. In collaboration with. Cold Spring Harbor Laboratory & New York Genome Center. Module #: Title of Module. 3. Module 1 Introduction to RNA sequencing (lecture). Malachi Griffith & Obi Griffith

489 views • 34 slides

Visualization Approaches for Gene Expression Data

Visualization Approaches for Gene Expression Data. Matt Hibbs Assistant Professor The Jackson Laboratory. Transcriptomics & Gene Expression. DNA. Transcription. mRNA. Ribosome. Translation. Proteins. Simultaneous measurement of transcription for the entire genome

482 views • 34 slides

Canadian Bioinformatics Workshops

Canadian Bioinformatics Workshops. www.bioinformatics.ca. Module #: Title of Module. 2. Module 1 Introduction to RNA sequencing (lecture). Malachi Griffith & Obi Griffith Informatics for RNA-sequence Analysis June 3-4, 2013. www.malachigriffith.org mgriffit@genome.wustl.edu

526 views • 29 slides

RNA-seq analysis

387 views • 29 slides

Scalable Algorithms for Next-Generation Sequencing Data Analysis

Scalable Algorithms for Next-Generation Sequencing Data Analysis. Ion Mandoiu UTC Associate Professor in Engineering Innovation Department of Computer Science & Engineering. Next Generation Sequencing. Illumina HiSeq 2000. Roche/454 FLX Titanium. http://www.economist.com/node/16349358.

960 views • 27 slides

Introduction to RNAseq

407 views • 25 slides

A Bioinformatics Pipeline to Explore Transcriptional Regulation in Plants

A Bioinformatics Pipeline to Explore Transcriptional Regulation in Plants. By Amy Marshall-Colon (University of Illinois Urbana-Champaign), Mary Williams (ASPB), and Kranthi Varala (Purdue University). Differential expression analysis: Tools and techniques, outcomes. Microarray. Gene Network.

444 views • 24 slides

Differential expression analysis for sequence count data

Differential expression analysis for sequence count data. Wolfgang Huber Simon Anders. Context. Research group on statistical methods for genome biology Joint appointment between EMBL HD and EBI non-coding RNA, pervasive transcription genetics of complex traits

618 views • 23 slides

Walk-thru of CAGE exercise

342 views • 22 slides

336 views • 21 slides

Canadian Bioinformatics Workshops

Canadian Bioinformatics Workshops. www.bioinformatics.ca. In collaboration with. Cold Spring Harbor Laboratory & New York Genome Center. Module #: Title of Module. 3. Module 4 Isoform discovery and alternative expression (lecture). Malachi Griffith & Obi Griffith

260 views • 19 slides

Assembly Validation

Assembly Validation. Gene space statistics. Is my genome assembled good enough?. CEGMA predicted Genes in genome. CEGMA core proteins. mapping. BUSCO genes in genome. HMM search. BUSCO profiles. Proteins with hit to BUSCO gene set. gmap. ESTs mapped to genome scaffolds.

288 views • 12 slides

Detecting enriched regions (Chip- seq , RIP- seq ) Statistical evaluation of enriched regions

Bioinformatics Unit. OVERVIEW

194 views • 1 slides