'Fold recognition' presentation slideshows

Proteiinianalyysi 7

922 views • 81 slides

Computational analysis of membrane proteins implicated in metal transport in Arabidopsis thaliana

C IAVVL C LVFM S V E VV GG I K A NS LAIL T D AA H LL S D VAAFAI S LF S L W AA G W E A T P R QTY G FF R I E IL G ALV S I Q LI W LL T ALFLLI NT A Y MVV E FVA G FM SNS L G LI S D A CH MLF D C AALAI G L Y A SY I S R LPA NHQYNY G R G R F E VL S G Y V N AVFLVLV G

826 views • 71 slides

Machine Learning Algorithms for Protein Structure Prediction

Machine Learning Algorithms for Protein Structure Prediction. Jianlin Cheng Institute for Genomics and Bioinformatics School of Information and Computer Sciences University of California Irvine 2006. Outline. Introduction 1D Prediction 2D Prediction (Beta-Sheet Topology)

1.22k views • 65 slides

Conditional Graphical Models for Protein Structure Prediction

Conditional Graphical Models for Protein Structure Prediction. Yan Liu Language Technologies Institute School of Computer Science Carnegie Mellon University Oct 24, 2006. Nobelprize.org. DSCTFTTAAAAKAGKAKAG. Protein sequence. +. Protein function. Protein structure.

784 views • 61 slides

Advancement to Candidacy Computer Science Department by Rachel Karchin Advisor: Kevin Karplus

Local Statistical Dependencies in Protein Structure: Discovery, Evaluation, Prediction and Applications. Advancement to Candidacy Computer Science Department by Rachel Karchin Advisor: Kevin Karplus. Outline. Protein structure - primary, secondary, tertiary

705 views • 58 slides

Forces and Prediction of Protein Structure

Forces and Prediction of Protein Structure. Ming-Jing Hwang ( ??? ) Institute of Biomedical Sciences Academia Sinica. http://gln.ibms.sinica.edu.tw/. Sequence - Structure - Function.

658 views • 53 slides

563 views • 46 slides

Protein Tertiary Structure Prediction

Protein Tertiary Structure Prediction. Structural Bioinformatics. The Different levels of Protein Structure. Primary: amino acid linear sequence. Secondary: ? -helices, ? -sheets and loops. Tertiary : the 3D shape of the fully folded polypeptide chain.

625 views • 43 slides

Protein Tertiary Structure Prediction

Protein Tertiary Structure Prediction. Structural Bioinformatics. The Different levels of Protein Structure. Primary: amino acid linear sequence. Secondary: ? -helices, ? -sheets and loops. Tertiary : the 3D shape of the fully folded polypeptide chain.

886 views • 42 slides

Protein Tertiary Structure Prediction

Protein Tertiary Structure Prediction. Structural Bioinformatics. The Different levels of Protein Structure. Primary: amino acid linear sequence. Secondary: ? -helices, ? -sheets and loops. Tertiary : the 3D shape of the fully folded polypeptide chain. PDB: Protein Data Bank.

823 views • 42 slides

Protein Tertiary Structure Prediction

Protein Tertiary Structure Prediction. Structural Bioinformatics. The Different levels of Protein Structure. Primary: amino acid linear sequence. Secondary: ? -helices, ? -sheets and loops. Tertiary : the 3D shape of the fully folded polypeptide chain. PDB: Protein Data Bank.

613 views • 41 slides

PROTEOMICS 3D Structure Prediction

PROTEOMICS 3D Structure Prediction. Contents. Protein 3D structure. Basics PDB Prediction approaches Protein classification. Protein Structures:. Primary. Secondary. Tertiary. Quaternary. Packing of secondary elements. Packing of several polypeptide chains. Amino acid

572 views • 41 slides

Computer Matchmaking in the Protein Sequence/Structure Universe

Computer Matchmaking in the Protein Sequence/Structure Universe. Thomas Huber Supercomputer Facility Australian National University Canberra email: Thomas.Huber@anu.edu.au. The ANU Supercomputer Facility. A facility available to all members of the ANU

515 views • 41 slides

Protein Structure Prediction: Homology Modeling & Threading/Fold Recognition

Protein Structure Prediction: Homology Modeling & Threading/Fold Recognition. D. Mohanty NII, New Delhi. Experimental Methods for Structure Determination. Computational Approaches for Protein Structure Prediction. Methods based on laws of physical chemistry

1.12k views • 36 slides

Three-Stage Prediction of Protein Beta-Sheets Using Neural Networks, Alignments, and Graph Algorithms

Three-Stage Prediction of Protein Beta-Sheets Using Neural Networks, Alignments, and Graph Algorithms. Jianlin Cheng and Pierre Baldi Institute for Genomics and Bioinformatics School of Information and Computer Sciences University of California Irvine.

481 views • 29 slides

Protein Structure Prediction

451 views • 23 slides

Fold Recognition

Fold Recognition. Ole Lund, Associate professor, CBS. Fold recognition. Find template for modeling 1st step in comparative modeling Can be used to predict function. Template identification. Search with sequence Blast against proteins with known structure Psi-Blast against all proteins

389 views • 21 slides

An Introduction to Protein Fold Recognition

An Introduction to Protein Fold Recognition. Protein Fold Recognition and Threading Algorithms. Folding vs. Prediction. Folding Determining the way in which a polypeptide really fold (biophysics approach) Prediction

714 views • 20 slides

R Karchin, M Cline, Y Mandel-Gutfreund, K Karplus

Hidden Markov Models That Use Predicted Local Structure for Fold Recognition: Alphabets of Backbone Geometry. R Karchin, M Cline, Y Mandel-Gutfreund, K Karplus. Problem. Parent fold may have low sequence similarity Most often, query is only sequence. Proposed Solution.

285 views • 16 slides

Protein structure prediction in 2002

Protein structure prediction in 2002. Jack Schonbrun, William J Wedemeyer and David Baker. CASP: Critical Assessment of Protein Structure Prediction. A competition of protein structure prediction Predict the structure of target sequences whose structures will be released soon.

296 views • 8 slides