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GBrowse: Generic Genome Browser

GBrowse: Generic Genome Browser. September 2003 Update Lincoln Stein, CSHL. GBrowse. Documentation. PODified Documentation Man pages Text HTML One-click web page Illustrated tutorial No database needed. Installation Helpers. Genbank2GFF UCSC2GFF Two versions Gadfly2GFF

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GBrowse: Generic Genome Browser

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  1. GBrowse: Generic Genome Browser September 2003 Update Lincoln Stein, CSHL

  2. GBrowse

  3. Documentation • PODified Documentation • Man pages • Text • HTML • One-click web page • Illustrated tutorial • No database needed

  4. Installation Helpers • Genbank2GFF • UCSC2GFF • Two versions • Gadfly2GFF • GFF3 Support

  5. Schema Enhancements • Chado support improved • Most (all?) performance issues resolved • Bio::DB::GFF improved • Delete/update support • Update plugin

  6. Other Notable Happenings • “ISB GBrowse” released • Multiple data sources • DAS integration • “Don’s GBrowse” • MARC GBrowse • Closed loop system

  7. Credits CSHL Shuly Avraham Scott Cain ISI Paul Edelfsen Robert Hubley BDGP Chris Mungall ShengQiang Shu Elsewhere Marc Colisimo Marc Logghe HGMP-RC Fugu Shawn Hoon http://www.gmod.org

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