RNA Structure Prediction. Rfam – RNA structures database RNAfold – RNA secondary structure prediction tRNAscan – tRNA prediction. Rfam. Different search modes. http://rfam.sanger.ac.uk/. Browse Rfam. :RibosomalRNA :Small RNA (mainly bacterial) :Generally repressors of mRNA.
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Different search modes
:Small RNA (mainly bacterial)
:Generally repressors of mRNA.
:Small nuclear RNA (eukaryotes)
:Parts of the mRNA involved in the regulation of it’s own activity
:Internal ribosomal entry site
:::::: free extremes
<<<>>> Internal Stem
,,,,,, Internal loop
RNA or DNA parameters
Fold Algorithm: partition function recomended
Advanced fold options
Email (necessary for large sequences)
Link to your previous run
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a program for detection of transfer RNA genes
in genomic sequence
It can process very long sequences