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Comprehensive Overview of SPM8 Software for Neuroimaging Analysis

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This document provides a detailed overview of SPM8, an open-source software for the statistical analysis of neuroimaging data. It covers essential features such as image time-series analysis, design matrices, spatial filtering, realignment, smoothing, general linear models, and statistical inference techniques. Learn about the software requirements for MATLAB, compatible platforms, and supported file formats including NIfTI and DICOM. Explore additional resources, documentation, and the active SPM community for support. Ideal for researchers and students in neuroimaging.

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Comprehensive Overview of SPM8 Software for Neuroimaging Analysis

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  1. SPM Software & Resources Wellcome Trust Centre for Neuroimaging University College London SPM Course London, May 2011

  2. Image time-series Statistical Parametric Map Design matrix Spatial filter Realignment Smoothing General Linear Model StatisticalInference RFT Normalisation p <0.05 Anatomicalreference Parameter estimates

  3. Software: SPM8 • Open Source academic freeware (under GPL) • Documented and informally supported • Requirements: • MATLAB: 7.1 (R14SP3) to 7.10 (R2010a)no Mathworks toolboxes required • Supported platforms (MEX files): • File Formats: • Images: NIfTI-1 (& Analyze, DICOM) • Surface meshes: GIfTI • M/EEG: most manufacturers (with FieldTrip’s fileio) Mac Intel (32 and 64 bit) Linux (32 and 64 bit) Windows (32 and 64 bit)

  4. SPM Interface

  5. SPMweb • Introduction to SPM • SPM distribution: SPM2, SPM5, SPM8 • Documentation & Bibliography • SPM email discussion list • SPM short course • Example data sets • SPM extensions http://www.fil.ion.ucl.ac.uk/spm/

  6. SPM Toolboxes • User-contributed SPM extensions:http://www.fil.ion.ucl.ac.uk/spm/ext/

  7. SPM Documentation SPM Books:Human Brain Function I & II Statistical Parametric Mapping Peer reviewed literature Online help & function descriptions SPM Manual

  8. SPM Online Bibliography

  9. External Resources • SPM @ Wikipedia • http://en.wikipedia.org/wiki/Statistical_parametric_mapping • SPM @ Scholarpedia • http://www.scholarpedia.org/article/SPM • SPM @ WikiBookshttp://en.wikibooks.org/wiki/SPM • MRC-CBU Imaging/MEG wiki • http://imaging.mrc-cbu.cam.ac.uk/imaging/CbuImaging • http://imaging.mrc-cbu.cam.ac.uk/meg • SPM @ NITRC • http://www.nitrc.org/projects/spm/

  10. SPM Mailing List • spm@jiscmail.ac.uk • Web home page • http://www.fil.ion.ucl.ac.uk/spm/support/ • Archives, archive searches, instructions • Subscribe • http://www.jiscmail.ac.uk/ • email jiscmail@jiscmail.ac.uk • join spm Firstname Lastname • Participate & learn • email spm@jiscmail.ac.uk • Monitored by SPMauthors • Usage queries, theoretical discussions, bug reports, patches, techniques, &c… http://www.fil.ion.ucl.ac.uk/spm/support/ spm@jiscmail.ac.uk

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