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Ch 23: Understanding Diversity: Systematics

Ch 23: Understanding Diversity: Systematics. phylogeny systematics taxonomy taxon. How to categorize life? life vs. non-life (?prehistory) plants (non-motile) vs. animals (motile) Greek philosophers including Aristotle ( born 384 - died 322 BC ).

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Ch 23: Understanding Diversity: Systematics

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  1. Ch 23: Understanding Diversity: Systematics

  2. phylogeny systematics taxonomy taxon

  3. How to categorize life? life vs. non-life (?prehistory) plants (non-motile) vs. animals (motile) Greek philosophers including Aristotle (born 384 - died 322 BC)

  4. add Protista/Protoctista & sub-group Monera (Haeckel 1866) prokaryotic vs. eukaryotic cells (Chatton 1937)

  5. reorganized classification into 4 kingdoms (Copeland 1930s?) 5 kingdoms; adding Fungi (Whittaker 1959)

  6. 3 domains (Carl Woese 1977) Carol J. Bult

  7. further elaborated by Mitchell Sogin (early eukaryotes) & many others

  8. -> 6 kingdoms (compromise) still argued: Lake’s 4 domains, Cavalier-Smith & others’ > 6 kingdoms

  9. horizontal gene transfers genome fusions clades?

  10. Groups of organisms on a phylogenetic tree (excluded)

  11. Homologous structures 18-14 modified leaves 18-13 terrestrial vertebrate forelimbs

  12. Homoplasies = analogous structures Australian marsupial “mole” 18-16 spiky plant parts N American placental mole

  13. Phenetics/evolutionary systematics numerical taxonomy eg: Birds -> different enough to be a separate class from reptiles

  14. Cladistic systematics clade cladogram synapomorphy vs. (sym)plesiomorphy outgroup parsimony eg: Birds -> sub-group of Reptile class

  15. Morphology

  16. Morphology: Developmental data eg: early animal embryo cleavage (30-5)

  17. Biochemistry: Lipids 2 species of Pseudomonas

  18. Biochemistry: Proteins eg: Isozyme patterns from a fungus

  19. Biochemistry: Proteins eg: amino acid sequence comparison

  20. Biochemistry: Proteins eg: 3D structure comparison myoglobin

  21. Biochemistry: DNA Sequence analysis Relationships between canids using DNA sequences

  22. Stoneking, et al. Mitochondrial DNA study of humans

  23. 2 representations of the same data

  24. Other kinds of trees Phylogram - shows genetic change Ultrametric tree - shows time

  25. Methods of generating trees Distance Parsimony Maximum likelihood

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