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Phenome Database Integration Workshop Barcelona 26th February 2006

Phenome Database Integration Workshop Barcelona 26th February 2006. Searching distributed phenomic databases Simon Greenaway, Medical Research Council, Harwell,. Phenome Database Integration Workshop Barcelona 26th February 2006. Contents:. 1. Overview of available resources.

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Phenome Database Integration Workshop Barcelona 26th February 2006

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  1. Phenome Database Integration Workshop Barcelona 26th February 2006 Searching distributed phenomic databases Simon Greenaway, Medical Research Council, Harwell,

  2. Phenome Database Integration Workshop Barcelona 26th February 2006 Contents: 1. Overview of available resources 2. Searching resources 3. Solutions….

  3. Phenome Database Integration Workshop Barcelona 26th February 2006 1. Overview of available resources MPD - Mouse Phenome Database Jackson Laboratory

  4. Phenome Database Integration Workshop Barcelona 26th February 2006 1. Overview of available resources MPD - Mouse Phenome Database Jackson Laboratory Hierarchical browser of phenotype measurement types

  5. Phenome Database Integration Workshop Barcelona 26th February 2006 1. Overview of available resources MPD - Mouse Phenome Database Jackson Laboratory Hierarchical browser of phenotype measurement types

  6. Phenome Database Integration Workshop Barcelona 26th February 2006 1. Overview of available resources MPD - Mouse Phenome Database Jackson Laboratory Hierarchical browser of phenotype measurement types Graphical and numerical data displays No easy download of selected data

  7. Phenome Database Integration Workshop Barcelona 26th February 2006 1. Overview of available resources europhenome Hierarchical browser of phenotype measurement types

  8. Phenome Database Integration Workshop Barcelona 26th February 2006 1. Overview of available resources europhenome Hierarchical browser of phenotype measurement types Numerical data displays

  9. Phenome Database Integration Workshop Barcelona 26th February 2006 1. Overview of available resources europhenome Hierarchical browser of phenotype measurement types Numerical data displays No download of selected data

  10. Phenome Database Integration Workshop Barcelona 26th February 2006 1. Overview of available resources MGI Mammalian Phenotype Browser Access to ‘characterised’ phenotype data Ontological structure - but does not exploit the rich structure of ontologies. Can this type of data be described by the same XML Schema as numerical phenotype data?

  11. Phenome Database Integration Workshop Barcelona 26th February 2006 1. Overview of available resources MGI Mammalian Phenotype Browser Access to ‘characterised’ phenotype data Ontological structure - but does not exploit the rich structure of ontologies. Can this type of data be described by the same XML Schema as numerical phenotype data?

  12. Phenome Database Integration Workshop Barcelona 26th February 2006 1. Overview of available resources MGI Mammalian Phenotype Browser Access to ‘characterised’ phenotype data Ontological structure - but does not exploit the rich structure of ontologies. Can this type of data be described by the same XML Schema as numerical phenotype data?

  13. Phenome Database Integration Workshop Barcelona 26th February 2006 2. Searching resources Two sorts of data that could be searched: 1. Metadata - allows finding what data a site holds. 2. Data - allows analysis of phenotype data across sites. A global mouse phenotype datasource.

  14. Phenome Database Integration Workshop Barcelona 26th February 2006 3. Solutions…. Common data transfer standards XML Schema, one for metadata and one for data? Cross-mapping of fields decided by each group? Can one schema describe numerical and non-numerical data? Simple API to publish data to external applications Web-based, simple search API & XML results? More complex API for high-throughput applications ‘Grid’ based API?

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