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First analysis steps

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First analysis steps

581 views • 57 slides

Preprocessing of cDNA microarray data

Preprocessing of cDNA microarray data. Lecture 19, Statistics 246, April 1, 2004. Begin by looking at the data. Was the experiment a success? What analysis tools should be used? Are there any specific problems?. Red/Green overlay images.

692 views • 54 slides

Preprocessing of cDNA microarray Data

Preprocessing of cDNA microarray Data. Statistics 246, Spring 2002, Week 7, Lecture 2. Begin by looking at the data. Was the experiment a success? What analysis tools should be used? Are there any specific problems?. Red/Green overlay images.

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First analysis steps

679 views • 53 slides

Pre-processing - Normalization Databases

613 views • 52 slides

Statistics for Microarrays

Statistics for Microarrays. Normalization Review and Cluster Analysis. Class web site: http://statwww.epfl.ch/davison/teaching/Microarrays/. Normalization Methods. Global adjustment (e.g. median or mean for a set of genes)

627 views • 46 slides

Microarray Normalization

Microarray Normalization. Issues in High-Throughput Data Analysis BIOS 691-803 Spring 2010 Dr Mark Reimers. Normalization of Expression Arrays. Historical approaches 1995-2005 Current standard approaches Q.75 for Agilent Quantile for Affymetrix and Nimblegen VSN for Illumina

622 views • 43 slides

WORKSHOP SPOTTED 2-channel ARRAYS DATA PROCESSING AND QUALITY CONTROL

WORKSHOP SPOTTED 2-channel ARRAYS DATA PROCESSING AND QUALITY CONTROL. Eugenia Migliavacca and Mauro Delorenzi, ISREC, December 11, 2003. AIMS. Discussion Information Introduction to the use of the webpage for automated normalization interface btw experimentalists and analysts feedback

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Introduction to genome biology and microarrays experiment

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Chapter 2: Variables, Operations, and Strings

374 views • 27 slides

Normalization of 2 color arrays

375 views • 19 slides

Henrik Bengtsson hb@maths.lth.se Mathematical Statistics Centre for Mathematical Sciences

Plate Effects in cDNA Microarray Data. Henrik Bengtsson hb@maths.lth.se Mathematical Statistics Centre for Mathematical Sciences Lund University. Outline. Intensity dependent effects A new way of plotting microarray data Plate effects Plate normalization Measure of Fitness Results

270 views • 17 slides