'Log ratio' presentation slideshows

Post-calibration of YSI chlorophyll

2.22k views • 208 slides

Microarray Data Analysis

Microarray Data Analysis. Tutorial at ISMB 2008 Mark Reimers Virginia Commonwealth University. Outline. Quality assessment Normalizing expression arrays Normalizing other array types Selecting genes Identifying functional groups. Array Quality Assessment . ISMB 2008 Microarray Tutorial

1.8k views • 158 slides

Microarray Data Normalization and Analysis

Microarray Data Normalization and Analysis. John Quackenbush 15 February 2003 MGED/AAAS Denver. The Experimental Design. The Experimental Design dictates a good deal of what you can do with the data Good normalization and processing reflects the experimental design

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Quality control and normalization

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Tutorial 7

Tutorial 7. Gene expression analysis. Gene expression analysis. Expression data GEO UCSC ArrayExpress General clustering methods Unsupervised Clustering Hierarchical clustering K-means clustering Tools for clustering EPCLUST Mev Functional analysis Go annotation.

707 views • 57 slides

Synopsis

Synopsis. It has been estimated that at least 40% of the total human genome sequence contains the integrated fragments of genomic parasites Retroviruses, Retrotransposons, DNA transposons, and parvoviruses can efficiently insert new sequence into the human genome

684 views • 53 slides

Microarray normalization and error models Wolfgang Huber European Bioinformatics Institute

Microarray normalization and error models Wolfgang Huber European Bioinformatics Institute. H. Sueltmann DKFZ/MGA. Why do you need normalisation?. From: lymphoma dataset vsn package Alizadeh et al., Nature 2000. PCR plates. Scatterplot, colored by PCR-plate

620 views • 51 slides

Gene Finding

579 views • 43 slides

MIcroarray Data Analysis System (version 2.19 )

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Edward Marcotte /Univ. of Texas/BIO337/Spring 2014

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Applications of microarrays

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Develop mathematical, statistical, and computational methods

Develop mathematical, statistical, and computational methods to analyse biologically or technologically novel experiments in order to understand disease-relevant regulatory and genetic interaction networks. What we do.

364 views • 24 slides

? ratios and fold changes

405 views • 22 slides

limmaGUI A Point-and-Click Interface for cDNA Microarray Analysis

limmaGUI A Point-and-Click Interface for cDNA Microarray Analysis. James Wettenhall and Gordon Smyth Division of Genetics and Bioinformatics Walter and Eliza Hall Institute of Medical Research. limma, limmaGUI and affylmGUI. limma : linear models for microarrays by Gordon Smyth

435 views • 16 slides

TR PR TL PL BL BP

-6. 0. +6. Log(Ratio). TR PR TL PL BL BP .

94 views • 1 slides

100

Absent. Conserved. 100. 90. 80. 70. PTI > 97%. 60. 90% > PTI > 97%. Proportion (%). 80% > PTI > 90%. 50. PTI = 0%. 40. 30. 20. 10. 0. -5.0. -4.0. -3.0. -2.0. -1.0. 0.0. Log Ratio.

179 views • 1 slides