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Enrichment analysis using DAVID

Enrichment analysis using DAVID. By NFU Biology Algorithm lab. Outline. What is DAVID DAVID Tools Tools Demo. What is DAVID. DAVID is a Bioinformatics Database, and it is also provides many tools to analysis the gene data. DAVID Tools. DAVID Tools provides many function about

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Enrichment analysis using DAVID

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  1. Enrichment analysis using DAVID By NFU Biology Algorithm lab

  2. Outline • What is DAVID • DAVID Tools • Tools Demo

  3. What is DAVID • DAVID is a Bioinformatics Database, and it is also provides many tools to analysis the gene data.

  4. DAVID Tools DAVID Tools provides many function about 1. Functional Annotation 2. Gene Function Classification 3. Gene ID Conversion 4. Gene Name Batch Viewer 5. NIAID Pathogen Annotion

  5. Tools Demo • Functional Annotation Step1:Upload the Gene list for DAVID from Start Analysis

  6. Functional Annotation • Step2&3: Upload and select list type Upload list or file to DAVID Select Identifier and Gene List

  7. Functional Annotation • Successfully submitted gene list The gene list number from users upload Upload list file name Choice what kind tools you want (ex:Funtional Annotation Tool)

  8. Annotation Summary Results Individual view report: Percentage (involved genes/total genes) Gene from your list Single Chart Report for ONLY this annotation category Clustered or non-redundant chart report Linear or redundant chart report Table reportCombined view report of annotation terms for ALL selected annotation categories above: View and select annotation categories of your interests. (7 of them is pre-selected as default)

  9. Functional Annotation Clustering options and stringency The overall enrichment score for the group based on the EASE score of each term members. The higher, the more enriched.

  10. Functional Annotation Chart Minimum number of genes for the corresponding term Maximum EASE Score/P-value Original database/resource where the terms orient Enriched terms associated with your gene list Related term search Modified Fisher Exact P-value, EASE Score. The smaller, the more enriched.

  11. Functional Annotation Table Gene Name Annotation terms

  12. Gene Functional Classification Result select Gene ID Conversion Tool to change ID

  13. Gene ID Conversion Tool Selete ID you want and dress Submit to Conversion Tool

  14. Gene Accession Conversion Tool Input(GeneID) and output data(UniportID) information The data form user upload

  15. Thanks For Watching Producer by National Formosa University Biology Algorithm lab at 2012/12

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