Assessment of sequence alignment. Lecture 10. Introduction. The Dot plot Matrix visualisation matching tool: Basics of Dot plot Examples of Dot plot matching sequences Tandems repeats self matching Inverted repeats: genetic palindromes . Sequence alignment Analysis.
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adapted from understanding bioinformatics p. 77
This shows the effect of noise (blue line has be been inserted to highlight alignment if interest. The figure on the left represents SH2 sequence (sample files ) plotted against inself. The one on the right has been filter; in this case an alignment must be at least 10 residues long with a score of 3. adapted from understanding bioinformatics p. 77
Adapted from: dotplot example