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outreach.potatogenome

Multi-institutional / International Plant Genomics Training and Education. www.outreach.potatogenome.org. Potato 10K Microarrays Expression profiling of biotic stress.

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outreach.potatogenome

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  1. Multi-institutional / International Plant Genomics Training and Education www.outreach.potatogenome.org

  2. Potato 10K Microarrays Expression profiling of biotic stress • Fundamental biological research on disease resistance and other important properties of potato and Solanaceae using genomics. Summer Genomics Workshop, Prosser WA Potato undergoing RB gene mediated late blight disease resistance testing. Susceptible Resistant • Potato Genomic Resources: • Public structural and functional • genomic resources. red green • Outreach: Working community of scientists, educators and students to increase public awareness, training and education in plant genomics. Tia Beavret Heritage College, Yakima, WA Daniel Andrade International Potato Institute, CIP, Peru NSF Potato Genome Project Goals Potato Genome Project

  3. Center for Plant Genomics Training and Education Outreach Specific Goals • Encourage and increase participation of members of under-represented groups in plant genomics research • Foster public awareness in the areas of biodiversity and applications of plant genomics research

  4. Participation of Under-Represented Groups in Plant Genomics Training and Education Activities Summer Genomics Workshops Community Gardens Public Awareness Tara Jones and Tomas Santiago at the PGEC greenhouse in Albany, CA Summer Camp at the UC Botanical Garden

  5. I. Summer Genomics Workshops Workshop Goals Educate students about basic Solanaceae morphology and biodiversity in a hands-on environment Train students in bioinformatics Teach students to conduct a genomics experiment and analyze results Provide students with the opportunity to present their work to the public and local communities

  6. Can we use genetic markers to determine the geographical origin of the Ozette potato? Makah Nation Ozette Potato

  7. 17th century

  8. Field Studies Multidisciplinary Training Laboratory Experience Community Involvement Recruitment/Evaluation I. Summer Genomics Workshops Workshop Activities / Goals Len Black, Gary Pierce, and Dan Falco discuss the potato harvest at Heritage College Tomas Santiago and Tara Jones conduct experiments at the Baker Lab

  9. I. Summer Genomics Workshops A. Field Studies Educate students about basic Solanaceae morphology and biodiversity in a hands-on environment Brown Lab/ Makah Nation UC Botanical Garden Tomas Santiago and Tara Jones plant wild potatoes in the UC Botanical Gardens Crops of the World Garden. Cassandra Smith, Hazel Denny and Neuee Ward harvest Ozette tubers.

  10. I. Summer Genomics Workshops B. Multidisciplinary Training Train students in bioinformatics UC Berkeley/ TIGR Brown Lab/ Makah Nation Tomas Santiago and Tara Jones visit TIGR during their summer genomics workshop for bioinformatics training. Hazel Denny, Tia Beavert and Cassandra Smith learn how to access and use TIGRs online databases.

  11. I. Summer Genomics Workshops C. Laboratory Experience Teach students to conduct a genomics experiment and analyze results Brown Lab/ Makah Nation UC Berkeley/ TIGR Barbara Baker shows Tara and Tomas the proper procedure for grinding potato leaf tissue and extracting genomic DNA. Daniel Andrade, CIP, reviews the principles of PCR With Cassandra Smith and Tia Beavert.

  12. I. Summer Genomics Workshops D. Community Involvement Provide students with the opportunity to present their work to the public and local communities Tara and Tomas produced a poster describing their summer genomics workshop experiment and the results they obtained.

  13. I. Summer Genomics Workshops E. Recruitment/Evaluation • Recruitment • UC Berkeley/ TIGR • El Cerrito High School AP Biology Instructor • 2003 Summer Genomics Participants • Brown Lab/ Makah Nation • Makah Nation Head Start Science Instructor • Director, Makah Nation Cultural and Research Center • Evaluation • UC Berkeley/ TIGR • El Cerrito High School AP Biology Instructor • 2003 Summer Genomics Participants • Brown Lab/ Makah Nation • 2003 Summer Genomics Participants • Collaborator, International Potato Center

  14. Center for Plant Genomics Training and Education Outreach Specific Goals • Encourage and increase participation of members of under-represented groups in plant genomics research • Foster public awareness in the areas of biodiversity and applications of plant genomics research

  15. Garden Goals II. Community Gardens Educate the public about the importance of biodiversity and genomics research in a hands-on environment Provide students with a venue present their work to the public and local communities Serve as a resource for hands-on plant biology and nutrition lessons Heritage College Garden Lauri Twitchell, Tomas Santiago, and Tara Jones put up a sun shield for the Crops of the World Display at the UC Botanical Garden

  16. B. Public Forum II. Community Gardens Provide students with a venue to present their work to the public and local communities Tara and Tomas’ final poster was showcased at the UC Botanical Garden Annual Crops of the World Festival. Tia Beavert and Sandra Hoptowit present their posters at Heritage College Garden Day.

  17. Public Information III. Public Awareness Curriculum Posters/Displays Web: Public Portal Jenny White instructs Tara Jones at the UC Botanical Garden Tara Jones places her sign at the UC Botanical Garden

  18. A. Curriculum III. Public Awareness • Potato Genome Project Background • Solanaceae and Solanum Characteristics and Morphology • Educational Articles • Daily Calendar • Experimental Protocol • Additional Resources

  19. Signage in Community Gardens on Display III. Public Awareness Tomas and Tara researched and produced informational signs for the UC Botanical Gardens. Tomas and Tara presented their final poster to an audience of parents, administrators, guests and colleagues at the annual Harvest Reception during the fall of 2004. Tia Beavert gives a presentation about her summer genomics work to members of the Baker Lab.

  20. C. Webpage: Public Portal III. Public Awareness http://outreach.potatogenome.org

  21. Specific Goal Project Goal • Encourage and increase participation of members of under-represented groups in plant genomics research • Foster public awareness in the areas of biodiversity and applications of plant genomics research • Utilize genomic resources for tracing potato distribution and evolution Develop and use genomic resources to address fundamental questions about disease resistance and other key processes in potato, an important crop worldwide. Center for Plant Genomics Training and Education Summary

  22. Chancellor’s Award Awards/Recognition 2003 University of California, Berkeley Chancellor’s University/ Community Partnership Recognition Receiving the recognition award on behalf of the Plant Genomics Training and Education Program.

  23. Upcoming Projects and Events Future Plans Plant Biotechnology Curriculum Secondary Teacher Training Heritage College Demonstration Pavilion

  24. Potato Genome Project Interagency / Multi-institutional / International Plant Genomics Training and Education El Cerrito High School Allison Kittay, AP Biology Instructor Heritage College Department of Botany, Environmental Science Department of Agronomy and Physical Science Department of Business Administration and Accounting UC Berkeley Baker Lab, Plant Gene Expression Center Department of Plant and Microbial Biology Makah Nation Makah Cultural and Research Center The Institute For Genomic Research Buell Lab Education and Training Department USDA-ARS Baker Lab, Albany, CA Brown Lab, Prosser, WA Yakama Nation International Potato Center Baker Lab, UC Berkeley Bradeen Lab, U. Minnesota Brown Lab, USDA Prosser, WA Buell Lab, TIGR Jahn Lab, Cornell University Jiang Lab, U. Wisconsin Jones Lab, Sainsbury Institute May Lab, U. Minnesota

  25. Multi-institutional / International Plant Genomics Training and Education www.outreach.potatogenome.org

  26. Potato Genome Project Multi-institutional / International Plant Genomics Training and Education USDA-ARS Baker Lab, Albany, CA Brown Lab, Prosser, WA UC Berkeley Baker Lab, Plant Gene Expression Center Department of Plant and Microbial Biology The Institute For Genomic Research Buell Lab Education and Training Department Makah Nation Makah Cultural and Research Center Heritage College Department of Botany, Environmental Science Department of Agronomy and Physical Science Department of Business Administration Accounting El Cerrito High School Allison Kittay, AP Biology Instructor Yakama Nation International Potato Center

  27. Potato Genome Project Multi-institutional / International Plant Genomics Training and Education U. Minnesota Bradeen Lab, St. Paul, MN May Lab, St. Paul, MN Cornell University Jahn Lab, Ithaca, NY U. Wisconsin Jiang Lab, Madison WI Sainsbury Institute Jones Lab, Norwich, UK International Potato Center Marc Ghislain, Merideth Bonierbale ARS-UC Berkeley Baker Lab, Albany, CA The Institute for Genomic Research Buell Lab ARS-Washington State University Brown Lab, Prosser, WA

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