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agriXchange workshop at EFITA 2011, Praha July

CIARD and agINFRA - creating a global framework for information sharing in agricultural research and innovation. Dr. Johannes Keizer Office of Knowledge Exchange, Research and Extension Food and Agriculture Organization of the UN. agriXchange workshop at EFITA 2011, Praha July.

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agriXchange workshop at EFITA 2011, Praha July

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  1. CIARD and agINFRA - creating a global framework for information sharing in agricultural research and innovation Dr. Johannes Keizer Office ofKnowledge Exchange, Research and Extension Food andAgricultureOrganizationofthe UN agriXchangeworkshopat EFITA 2011, Praha July

  2. We will promote research for food and agriculture, including research to adapt to, and mitigate climate change, and access to research results and technologies at national, regional and international levels. We will reinvigorate national research systems and will share information and best practices. We will improve access to knowledge. worldfoodsummit 2009

  3. http://aims.fao.org

  4. http://www.ciard.net

  5. Coherence in Information forAgriculturalResearchforDevelopment A new global movement to provide a platform for coherence between information-related initiatives to make public domain agricultural research information and knowledge truly accessible to all 2005 2007 2008 2009 2010 2011 2012 1st IISAST Consultation TASK FORCES CIARD Initiative launched (15 founding partners) Regional Consultations 70 countries 150 info prof. 2nd IISAST Consultation GCARD 2012 e-Consultation & Beijing Consultation + Regional Workshops CIARD endorsed (GCARD and FARA) +112 partners and growing…

  6. Information InfrastructureforAgriculturalResearch and Innovation

  7. DistributedRepositories • stats • gene banks • gis data • blogs, • journals • open archives • raw data • technologies • learningobjects • ………..

  8. The solution: agINFRA • Produce linked open data fromalldatasets • Use common referencevocabulariesto interlink • Don’t wait ! Wrap the Legacy

  9. The Infrastructureelements VocBench vocabulary server concepts and entitiestriples RING routemapto information nodes and gateways Tools LOD enabled software Cloud storagefor RDF triples Data Services Webservices + APIsto triple stores LOD Generator triplifier, concept and entityidentifier

  10. LodGenerator: process LOD Generator triplifier, concept and entityidentifier

  11. Data Servicesprocess

  12. agINFRA – the Project • FAO and the ChineseAcademyofAgricultural Science are Senior Users in the Project • 4 MillionEurosfunding, butfor 11 partners • Project starts on November 1 for 3 years • CIARD partners can post theirrequirements

  13. Under Construction • VocBench • AGROVOC Linked Open Data • AgroTagger • Triplifying AGRIS • Serendipitylinking • Drupalfrontendsfor triple stores • The CIARD R.I.N.G

  14. The Infrastructureelements VocBench vocabulary server concepts and entitiestriples RING routemapto information nodes and gateways Tools LOD enabled software Cloud storagefor RDF triples Data Services Webservices + APIsto triple stores LOD Generator triplifier, concept and entityidentifier

  15. The VocBench VocBench concepts and entitiestriples

  16. VocBench Features • Domain independent • Structure independent (i.e. thesauri, Glossaries, etc) • Supports RDF (SKOS, SKOS-XL), OWL • Supports collaborative editing • Supports editorial workflow, with user roles • Simple and advanced search • Supports data export: SKOS, Relational format (MySQL)

  17. The Infrastructureelements VocBench vocabulary server concepts and entitiestriples RING routemapto information nodes and gateways Tools LOD enabled software Cloud storagefor RDF triples Data Services Webservices + APIsto triple stores LOD Generator triplifier, concept and entityidentifier

  18. AgroTagger • Does Concept identification in unstructured texts • Uses Agrovoc as a controlled vocabulary • Prototype under testing with excellent results (entire repository of ICARDA indexed) • Will produce in future Structured RDF files that can be used to link data like “open Calais”

  19. Triplifying AGRIS (small exemple) <?xml version="1.0" encoding="utf-8"?> <rdf:RDFxmlns:ags="http://purl.org/agmes/1.1/"xmlns:foaf="http://xmlns.com/foaf/0.1/"xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#"xmlns:rdfs="http://www.w3.org/2000/01/rdf-schema#"xmlns:bibo="http://purl.org/ontology/bibo/"xmlns:dc="http://purl.org/dc/elements/1.1/"xmlns:dct="http://purl.org/dc/terms/"> <bibo:Journalrdf:about="http://aims.fao.org/aos/journal/c_b6e4ca85"> <bibo:ISSN>0101-9066</bibo:ISSN> <bibo:ISSN>0101-9066</bibo:ISSN> <dct:title><![CDATA[Circular técnica]]></dct:title> <dct:alternative><![CDATA[Circular técnica (Centro Nacional de Pesquisa de Seringueira e Dendê)]]></dct:alternative> <dct:alternative><![CDATA[Circular Tecnica - Centro Nacional de Pesquisa da Seringueira e Dende]]></dct:alternative> <dct:alternative><![CDATA[Circular técnica - CNPSD]]></dct:alternative> <dct:alternative><![CDATA[Circ. téc.]]></dct:alternative> <ags:publisherPlacerdf:resource="http://aims.fao.org/aos/geopolitical.owl#Brazil"/> <dct:publisher><![CDATA[EmpresaBrasileira de PesquisaAgropecuária, Centro Nacional de Pesquisa de Seringueira e Dendê]]></dct:publisher> <dct:language>por</dct:language> <dct:date>1980</dct:date> <dct:subjectrdf:resource="http://aims.fao.org/aos/agrovoc/c_10795"/> <dct:subjectrdf:resource="http://aims.fao.org/aos/agrovoc/c_4650"/> <dct:subjectrdf:resource="http://aims.fao.org/aos/agrovoc/c_32372"/> <dct:subjectrdf:resource="http://aims.fao.org/aos/agrovoc/c_332"/> <dct:subjectrdf:resource="http://aims.fao.org/aos/agrovoc/c_3589"/> <dct:subjectrdf:resource="http://aims.fao.org/aos/agrovoc/c_5556"/> </bibo:Journal>

  20. Journal disambiguation: results • 2.644.818 AGRIS records • 2.171.113 records are journal records (82.09%) • 1.788.083 journal records have been covered by the disambiguation process (82.35%) • 14.658 journals have been correctly disambiguated • ~20.000 strings must be examined yet: they refer to journal’s titles • Triples have been generated:

  21. The Infrastructureelements VocBench vocabulary server concepts and entitiestriples RING routemapto information nodes and gateways Tools LOD enabled software Cloud storagefor RDF triples Data Services Webservices + APIsto triple stores LOD Generator triplifier, concept and entityidentifier

  22. “SerendipityLinking” • With four predefined queries we try to find in Google further information record related: • Search by Title, to find the full text of the document if it is available on line • Search by Author(s)+Agrovoc keywords, to find not only information about the author of the document but also other author’s publications about the same subjects • Search by Jounal Title • Search by Conference

  23. The BiotechGlossary: UsingDrupal as a Triple Store Browser • Data in VocBench • Triple Store • OWL ART API • Drupal

  24. The Infrastructureelements VocBench vocabulary server concepts and entitiestriples RING routemapto information nodes and gateways Tools LOD enabled software Cloud storagefor RDF triples Data Services Webservices + APIsto triple stores LOD Generator triplifier, concept and entityidentifier

  25. RING - Charts and numbers http://ring.ciard.net

  26. RING – Numbers http://ring.ciard.net/totals Number of documents potentially reachable through the services registered in the RING. Types of service considered: document repositories and bibliographic databases.

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