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BioPSE Source Code Organization

BioPSE Source Code Organization. Source Tree Organization. SCIRun. Packages linux src docs. BioPSE MatlabInterface. Core Dataflow StandAlone. Core: algorithms, datatypes, math, threads Dataflow: network, modules, ports, scheduler StandAlone: converters, utilities.

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BioPSE Source Code Organization

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  1. BioPSE Source Code Organization

  2. Source Tree Organization SCIRun Packages linux src docs BioPSE MatlabInterface Core Dataflow StandAlone Core: algorithms, datatypes, math, threads Dataflow: network, modules, ports, scheduler StandAlone: converters, utilities

  3. Core/ Directory

  4. Core/{Algorithms,Datatypes}/ • Core/Algorithms/ • DataIO/ -- Analyze, DICOM • Geometry/ -- Registration, Laplacian • Visualization/ -- MC, RenderField • Core/Datatypes/ • Meshes, Fields, Matrices, …

  5. src/Core/ Directory

  6. src/Core/{Geom,Geometry,…}/ • Core/Containers/ -- predates STL • Core/Geom/ -- OpenGL scenegraph • Core/Geometry/ -- Point, Tensor • Core/Math/ -- Expon, Trig, MinMax • Core/Persistent/ -- Object I/O • Core/Thread/ -- pthread, Mutex

  7. Dataflow/ Directory

  8. Dataflow/{GUI,Modules,Ports,XML}/ • Dataflow/GUI/ -- .tcl for modules • Dataflow/Modules/ -- Categories • Dataflow/Ports/ -- new Datatypes • Dataflow/XML/ -- .xml for modules

  9. src/Dataflow/ Directory

  10. src/Dataflow/{Network,Widgets,…}/ • Dataflow/Comm/ -- messages • Dataflow/Network/ -- Connection, Network, NetworkEditor, Scheduler • Dataflow/Resources/ -- XML parsing • Dataflow/Widgets/ -- Arrow, Point, Box, …

  11. Example Module: CastMatrix • SCIRun/src/Dataflow/ • Modules/Math/CastMatrix.cc • GUI/CastMatrix.xml • XML/CastMatrix.xml

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