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Scarlet Runner Bean Genome Assembly - PowerPoint PPT Presentation


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Scarlet Runner Bean Genome Assembly. Nancy Phang June 4, 2004. Contig266405 is 23.3 kb. SRB 23.3 kb Contig266405. Genscan. FGENESH. GENEMARK. Repeat. SRB 23.3 kb Contig266405 Overlaps . Overlap. ß. Genscan. FGENESH. GENEMARK. Repeat. Plant Repeats Database.

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slide5

SRB 23.3 kb Contig266405

Genscan

FGENESH

GENEMARK

Repeat

slide6

SRB 23.3 kb Contig266405 Overlaps

Overlap

ß

Genscan

FGENESH

GENEMARK

Repeat

slide7

Plant Repeats Database

  • There were 2 Small RNA gene repeats
  • They were a total of 349 bp in length
  • Covered 1.49% of sequence
  • Repeat 1 is located from: 14112- 13550 bp.
  • Repeat 2 is located from: 14663 – 14871 bp.
  • Repeats 3 and 4 are located from: 14202-14229bp and 14908-15142 and 13592-13922 bp.

RepeatMasker Results

  • There were 2 Small RNA gene repeats
  • They were a total of 349 bp in length
  • Covered 1.49% of sequence
  • Repeat 1 is located from 14202- 14429 bp and 15067-15142. Repeat 2 is located from 15265-15309 bp.