Genome Assembly of Scarlet Runner Bean Contig 266405 Reveals Small RNA Gene Repeats

Jul 04, 2025

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This study on the genome assembly of Scarlet Runner Bean presents findings on small RNA gene repeats located within Contig 266405. The analysis covers the location, length, and coverage of these gene repeats, providing valuable insights into the genetic makeup of the bean. Using tools like Genscan, FGENESH, and GENEMARK, the study showcases the presence of Plant Repeats in the database and presents RepeatMasker results. The identified small RNA gene repeats, with lengths totaling 349 bp, play a significant role in understanding the genetic composition of the Scarlet Runner Bean genome.

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Genome Assembly of Scarlet Runner Bean Contig 266405 Reveals Small RNA Gene Repeats

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Scarlet Runner Bean Genome Assembly Nancy Phang June 4, 2004
Contig266405 is 23.3 kb

SRB 23.3 kb Contig266405 Genscan FGENESH GENEMARK Repeat
SRB 23.3 kb Contig266405 Overlaps Overlap ß Genscan FGENESH GENEMARK Repeat
Plant Repeats Database • There were 2 Small RNA gene repeats • They were a total of 349 bp in length • Covered 1.49% of sequence • Repeat 1 is located from: 14112- 13550 bp. • Repeat 2 is located from: 14663 – 14871 bp. • Repeats 3 and 4 are located from: 14202-14229bp and 14908-15142 and 13592-13922 bp. RepeatMasker Results • There were 2 Small RNA gene repeats • They were a total of 349 bp in length • Covered 1.49% of sequence • Repeat 1 is located from 14202- 14429 bp and 15067-15142. Repeat 2 is located from 15265-15309 bp.