'Structure comparison' presentation slideshows

The evolution of domain superfamilies from a structural and functional perspective

The evolution of domain superfamilies from a structural and functional perspective. Oliver Redfern CATH-GENE3D group Dept. Structural and Molecular Biology University College London UK. The CATH and Gene3D Domain and protein family resources (sequence, structure, function).

581 views • 41 slides

Recombination based population genomics

698 views • 40 slides

Protein threading

Protein threading. Structure is better conserved than sequence Structure can adopt a wide range of mutations. Physical forces favor certain structures. Number of folds is limited. Currently ~700 Total: 1,000 ~10,000 TIM barrel. Protein Threading. Basic premise

394 views • 37 slides

Classification: understanding the diversity and principles of

453 views • 31 slides

A unified statistical framework for sequence comparison and structure comparison

A unified statistical framework for sequence comparison and structure comparison. Michael Levitt Mark Gerstein. Statistics Introduction. Statistics is the discipline which deals with inference in the presence of variation Given a score, how significant is it?

439 views • 28 slides

PowerMV Chemical Data Mining Environment

PowerMV Chemical Data Mining Environment. S. Stanley Young Jun Feng and Jack Liu NISS MPDM, McMaster University 4 June 2005. Outline. PowerMV, a chemistry data mining environment. rSVD, robust singular value decomposition, Liu, Hawkins, Ghosh,Young, PNAS (2003). Space-filling designs.

400 views • 27 slides

PowerMV Chemical Data Mining Environment

PowerMV Chemical Data Mining Environment. S. Stanley Young Jun Feng and Jack Liu NISS MPDM, McMaster University 4 June 2005. Outline. PowerMV, a chemistry data mining environment. rSVD, robust singular value decomposition, Liu, Hawkins, Ghosh,Young, PNAS (2003). Space-filling designs.

408 views • 27 slides

Classification: understanding the diversity and principles of

Classification: understanding the diversity and principles of. protein structure and function. MCSG 2001 structures. Protein structure classification. Main reference: Robert B. Russell (2002) Classification of Protein Folds. Molecular Biotechnology 20:17-28.

488 views • 24 slides

322 views • 21 slides

Genetic Algorithm in Protein Structure Comparison

Genetic Algorithm in Protein Structure Comparison. Chen Jinxiu,Feng yuan,Lan Man, Li Haiquan,Li Quan, Ren li'an Laboratories for Information Technology. Outline. Background: Protein Structure Comparison and Genetic Algorithm Overview of GA in structure comparison

479 views • 19 slides

Protein Structure Prediction and Analysis

Protein Structure Prediction and Analysis. Contents. 1. Protein Structure Prediction. - Homology Modeling, Threading, Ab Initio Structure Prediction. 2. Protein Structure Evaluation. - DSSP, PROCHECK, VADAR, Verify 3D. 3. Protein Structure Comparison.

485 views • 17 slides

Bioinformatics Applications in the Virtual Laboratory

Bioinformatics Applications in the Virtual Laboratory. Tomasz Jadczyk AGH University of Science and Technology , Krakow. Msc Thesis Supervisor: dr. Marian Bubak Advice: dr. Maciej Malawski. Outline. Thesis objectives Short introduction to bioinformatics and virtual laboratory

157 views • 15 slides

Chapter 9 Superposition and dynamic programming

Chapter 9 Superposition and dynamic programming. Most methods for comparing structures use some sorts of superposition and dynamic programming We have two structures A and B with elements in a given order A = A 1 A 2 ... A m and B = B 1 B 2 ... B n

143 views • 14 slides