'Specific gap penalties' presentation slideshows

Seminar in Structural Bioinformatics - Multiple sequence alignment algorithms .

Multiple sequence alignment algorithms. Elya Flax & Inbar Matarasso. Seminar in Structural Bioinformatics - Multiple sequence alignment algorithms. Outline. The importance of multiple string alignments in molecular biology. CLUSTAL W. Family representation.

985 views • 74 slides

Protein structure and homology modeling

Protein structure and homology modeling. Morten Nielsen, CBS, BioCentrum, DTU. Objectives. Understand the basic concepts of homology modeling Learn why even sequences with very low sequence similarity can be modeled Understand why is %id such a terrible measure for reliability

657 views • 43 slides

MCB 5472

MCB 5472. Sequence alignment. Peter Gogarten Office: BSP 404 phone: 860 486-4061, Email: gogarten@uconn.edu. OLD ASSIGNMENTS. Write a script that reads in a sequence and prints out the reverse complement.

442 views • 31 slides

Multiple Sequence Alignment (II)

Multiple Sequence Alignment (II). (Lecture for CS498-CXZ Algorithms in Bioinformatics) Oct. 6, 2005 ChengXiang Zhai Department of Computer Science University of Illinois, Urbana-Champaign.

508 views • 28 slides

Exploring Protein Sequences

Tutorial 5. Exploring Protein Sequences. Exploring Protein Sequences. Multiple alignment ClustalW Motif discovery MEME Jaspar. A. C. D. B. Multiple Sequence Alignment. More than two sequences DNA Protein Evolutionary relation Homology ? Phylogenetic tree Detect motif.

431 views • 27 slides

Multiple Sequence Alignments

568 views • 21 slides

Ab Initio Profile HMM Generation

Ab Initio Profile HMM Generation. Sam Gross. STOLEN FROM BATZOGLOU LECTURE. D m-1. D m. D 1. D 2. BEGIN. END. I 0. I 1. I m-1. I m. M 1. M 2. M m. Profile HMMs. Each M state has a position-specific pre-computed substitution table

204 views • 13 slides