'Sequence motifs' presentation slideshows

Protein Sequence Motifs

Protein Sequence Motifs. Aalt-Jan van Dijk Plant Research International, Wageningen UR Biometris , Wageningen UR aaltjan.vandijk@wur.nl. Plant Bioinformatics. Integrated analysis of omics datasets Transcriptomics Alternative splicing EST analysis Proteomics

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907 views • 64 slides

Lecture 6. Sequence motif models and counting

Lecture 6. Sequence motif models and counting. The Chinese University of Hong Kong CSCI3220 Algorithms for Bioinformatics. Lecture outline. Sequence motifs Biological motivations Representations k-mer counting Introduction to statistical modeling Motivating examples

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Sequence motifs, information content, and sequence logos

Sequence motifs, information content, and sequence logos. Morten Nielsen, CBS, Department of Systems Biology, DTU. Objectives. Visualization of binding motifs Construction of sequence logos Understand the concepts of weight matrix construction

551 views • 54 slides

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Bioinformatics and the Language of DNA

Bioinformatics and the Language of DNA. Aydin Tozeren aydin.tozeren@drexel.edu Center for Integrated Bioinformatics Drexel University, Philadelphia, PA, USA www.gpba-bio.com. Yeni Hayat/ New Life by Orhan Pamuk. Bir kitap okudum butun hayatim degisti

588 views • 51 slides

MOTIFS MOTIFSMARTIFAMORIFSMOOTIFSMICIFC

MOTIFS MOTIFSMARTIFAMORIFSMOOTIFSMICIFC. A sequence motif is a nucleotide or amino-acid sequence pattern that is widespread (repeated) and has or is conjectured to have a biological significance. Sequence motifs may be identical to each other or they may vary to a greater or lesser extent.

580 views • 47 slides

MOTIFS MOTIFSMARTIFAMORIFSMOOTIFSMICIFC

MOTIFS MOTIFSMARTIFAMORIFSMOOTIFSMICIFC. A sequence motif is a nucleotide or amino-acid sequence pattern that is widespread (repeated) and has or is conjectured to have a biological significance. Sequence motifs may be identical to each other or they may vary to a greater or lesser extent.

546 views • 47 slides

Sequence motifs, information content, and sequence logos

Sequence motifs, information content, and sequence logos. Morten Nielsen, CBS, Depart of Systems Biology, DTU. Why weight matrices?. The vast majority of biological motifs are characterized by a linear motif Post translational modifications Signal peptides T cell epitopes

580 views • 46 slides

Sequence motifs, information content, and sequence logos

Sequence motifs, information content, and sequence logos. Morten Nielsen, CBS, Depart of Systems Biology, DTU. Objectives. Visualization of binding motifs Construction of sequence logos Understand the concepts of weight matrix construction

605 views • 45 slides

Sequence motifs, information content, logos, and Weight matrices

Sequence motifs, information content, logos, and Weight matrices. Morten Nielsen, CBS, BioCentrum, DTU. Objectives. Visualization of binding motifs Construction of sequence logos Understand the concepts of weight matrix construction One of the most important methods of bioinformatics

466 views • 44 slides

Sequence motifs, and sequence logos, Neural networks

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Learning Sequence Motifs Using Expectation Maximization (EM) and Gibbs Sampling

Learning Sequence Motifs Using Expectation Maximization (EM) and Gibbs Sampling. BMI/CS 776 www.biostat.wisc.edu/~craven/776.html Mark Craven craven@biostat.wisc.edu March 2002. Announcements. HW due on Monday reading for next week Chapter 3 of Durbin et al. (already assigned)

606 views • 34 slides

Protein Local 3D Structure Prediction by Super Granule Support Vector Machines (Super GSVM)

Protein Local 3D Structure Prediction by Super Granule Support Vector Machines (Super GSVM). Dr. Bernard Chen Assistant Professor Department of Computer Science University of Central Arkansas Fall 2009. Goal of the Dissertation.

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