'Regulatory regions' presentation slideshows

Finding Regulatory Motifs in DNA Sequences

Finding Regulatory Motifs in DNA Sequences. Outline. Implanting Patterns in Random Text Gene Regulation Regulatory Motifs The Gold Bug Problem The Motif Finding Problem Brute Force Motif Finding The Median String Problem Search Trees Branch-and-Bound Motif Search

1.37k views • 116 slides

Motif Finding

Motif Finding. Kun-Pin Wu ( ??? ) Institute of Biomedical Informatics National Yang Ming University 2009/06/06. Finding Regulatory Motifs in DNA Sequences. Random Sample.

1.22k views • 101 slides

Finding Regulatory Motifs in DNA Sequences

Finding Regulatory Motifs in DNA Sequences. Random Sample.

1.16k views • 101 slides

Finding Regulatory Motifs in DNA Sequences

Finding Regulatory Motifs in DNA Sequences. Combinatorial Gene Regulation. A microarray experiment showed that when gene X is knocked out, 20 other genes are not expressed How can one gene have such drastic effects?. Regulatory Proteins.

1.09k views • 87 slides

The Shocking Details of Genome.ucsc.edu

The Shocking Details of Genome.ucsc.edu. History of the Code. Started in 1999 in C after Java proved hopelessly unportable across browsers. Early modules include a Worm genome browser (Intronerator), and GigAssembler which produced working draft of human genome.

754 views • 64 slides

745 views • 62 slides

Environmental Endocrine Disruptors

906 views • 46 slides

Control of Gene Expression

Control of Gene Expression. Chapter 16. Control of Gene Expression. Controlling gene expression is often accomplished by controlling transcription initiation. Regulatory proteins bind to DNA to either block or stimulate transcription, depending on how they interact with RNA polymerase.

884 views • 44 slides

Biological Databases

Biological Databases. Notes adapted from lecture notes of Dr. Larry Hunter at the University of Colorado . What can be discovered about a gene by a database search?. A little or a lot, depending on the gene

1.69k views • 41 slides

Finding Regulatory Motifs in DNA Sequences

Finding Regulatory Motifs in DNA Sequences. Outline. Implanting Patterns in Random Text Gene Regulation Regulatory Motifs The Gold Bug Problem The Motif Finding Problem Brute Force Motif Finding The Median String Problem Search Trees Branch-and-Bound Motif Search

536 views • 36 slides

SVM: Non-coding Neutral S equences V s Regulatory M odules

369 views • 31 slides

Special type of log linear models to fit DNA.

Special type of log linear models to fit DNA. Irina Abnizova 1 , Brian Tom 1 and Walter R. Gilks 2. 1 MRC Biostatistics Unit, Cambridge 2 Leeds University, Leeds. Why to fit models to DNA. improve annotation quality understanding of evolutionary processes leading to DNA diversion.

363 views • 28 slides

Finding Regulatory Motifs in DNA Sequences

Finding Regulatory Motifs in DNA Sequences. Combinatorial Gene Regulation. A microarray experiment showed that when gene X is knocked out, 20 other genes are not expressed How can one gene have such drastic effects?. Regulatory Proteins.

429 views • 27 slides

Transcription Regulation

Transcription Regulation. Zhiping Weng Nathan Trinklein Mark Gerstein Ross Hardison Mike Snyder. Area 1a: Define Regulatory Regions. How do we integrate the information in dozens of ChIP-chip tracks to best define regulatory regions?

393 views • 22 slides

Sarah Aerni July 8, 2005

297 views • 12 slides

Visualization and Analysis Workflow

Visualization and Analysis Workflow. December 14, 2009 Draft. /ber. The concept of a Workflow. Express the analysis of plant systems in terms of the data and operations on those data Multiple types of data (e.g., experimental, computed, archival)

333 views • 10 slides

What is gene?

What is gene?. Gene is a section of DNA molecule that has a unique and specific boiological function. It is a unit of heredity that is transmitted from one generation to next generation, carries information for protein synthesis .

513 views • 4 slides

ZD Blount et al. Nature 000 , 1-6 (2012) doi:10.1038/nature11514

Expression levels from native citT , native rnk and evolved rnk-citT regulatory regions during aerobic metabolism. ZD Blount et al. Nature 000 , 1-6 (2012) doi:10.1038/nature11514.

112 views • 1 slides

Identification of Compositionally Similar Cis -element Clusters in Coordinately Regulated Genes

GeneChip Experiments A set of Coordinately Expressed Genes. ESTs/cDNAs. BlastN/Blat Search for genomic sequence retrieval.

89 views • 1 slides

ORegAnno: Open Regulatory Annotation (oreganno)

F. B. A. C. G. D. E. A. A. C. C. B. B. D. E. F. G. H. I. D. E. ORegAnno: Open Regulatory Annotation (www.oreganno.org) An open access database and curation system for regulatory sequences. Griffith OL 1,2 , Montgomery SB 1,2 , Sleumer MC 2 , Bergman CM 3 , Bilenky M 2 ,

134 views • 1 slides