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Finding Regulatory Motifs in DNA Sequences

Finding Regulatory Motifs in DNA Sequences

Finding Regulatory Motifs in DNA Sequences. Outline. Implanting Patterns in Random Text Gene Regulation Regulatory Motifs The Gold Bug Problem The Motif Finding Problem Brute Force Motif Finding The Median String Problem Search Trees Branch-and-Bound Motif Search

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1.39k views • 119 slides
Finding Regulatory Motifs in DNA Sequences

Finding Regulatory Motifs in DNA Sequences

Finding Regulatory Motifs in DNA Sequences. Outline. Implanting Patterns in Random Text Gene Regulation Regulatory Motifs The Gold Bug Problem The Motif Finding Problem Brute Force Motif Finding The Median String Problem Search Trees Branch-and-Bound Motif Search

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1.42k views • 116 slides
Finding Regulatory Motifs in DNA Sequences

Finding Regulatory Motifs in DNA Sequences

Finding Regulatory Motifs in DNA Sequences. Outline. Implanting Patterns in Random Text Gene Regulation Regulatory Motifs The Gold Bug Problem The Motif Finding Problem Brute Force Motif Finding The Median String Problem Search Trees Branch-and-Bound Motif Search

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1.37k views • 116 slides
CS 6293 Advanced Topics: Current Bioinformatics

CS 6293 Advanced Topics: Current Bioinformatics

CS 6293 Advanced Topics: Current Bioinformatics. Motif finding. HW2. Available on course website First part: theoretical questions. Due on Mon, Oct 25 Second part: Presentation on Mon, Nov 1 Bonus: email me who are in your group and the papers you choose, by Wed, Oct 20.

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855 views • 84 slides
CS 5263 & CS 4593 Bioinformatics

CS 5263 & CS 4593 Bioinformatics

CS 5263 & CS 4593 Bioinformatics. Motif finding. What is a (biological) motif?. A motif is a recurring fragment, theme or pattern Sequence motif : a sequence pattern of nucleotides in a DNA sequence or amino acids in a protein

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733 views • 73 slides
CS 5263 & CS 4233 Bioinformatics

CS 5263 & CS 4233 Bioinformatics

CS 5263 & CS 4233 Bioinformatics. Motif finding. What is a (biological) motif?. A motif is a recurring fragment, theme or pattern Sequence motif : a sequence pattern of nucleotides in a DNA sequence or amino acids in a protein

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735 views • 73 slides
Finding Regulatory Motifs in DNA Sequences

Finding Regulatory Motifs in DNA Sequences

Finding Regulatory Motifs in DNA Sequences. Outline. Implanting Patterns in Random Text Gene Regulation Regulatory Motifs The Gold Bug Problem The Motif Finding Problem Brute Force Motif Finding The Median String Problem Search Trees Branch-and-Bound Motif Search

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673 views • 67 slides
CS5263 Bioinformatics

CS5263 Bioinformatics

CS5263 Bioinformatics. Lecture 11 Motif finding. HW2 2(C). Click to find out K and lambda. What is a (biological) motif?. A motif is a recurring fragment, theme or pattern Sequence motif : a sequence pattern of nucleotides in a DNA sequence or amino acids in a protein

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546 views • 54 slides
Finding Regulatory Motifs in DNA Sequences

Finding Regulatory Motifs in DNA Sequences

Finding Regulatory Motifs in DNA Sequences. Outline. Implanting Patterns in Random Text Gene Regulation Regulatory Motifs The Gold Bug Problem The Motif Finding Problem Brute Force Motif Finding The Median String Problem Search Trees Branch-and-Bound Motif Search

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536 views • 36 slides
Motif Search

Motif Search

Motif Search. What are Motifs. Motif (dictionary) A recurrent thematic element, a common theme. Find a common motif in the text. Find a short common motif in the text. Motifs in biological sequences.

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532 views • 36 slides
Motif Search

Motif Search

Motif Search. What are Motifs. Motif (dictionary) A recurrent thematic element, a common theme. Find a common motif in the text. Find a short common motif in the text. Motifs in biological sequences.

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385 views • 36 slides
Regulatory Motifs

Regulatory Motifs

Regulatory Motifs. Contents Biology of regulatory motifs Experimental discovery Computational discovery PSSM MEME. What Makes Regulatory Motifs Important? The DNA sequence in every cell of an individual is identical.

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435 views • 27 slides
Approaches

Approaches

Transcript data from detailed lab studies Transcript data from past experiments reveals co-expression. Large transcript data-sets Clustering of array data over development, biotic/abiotic stresses in order to discover co-regulation through co-expression.

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413 views • 24 slides
Comparative Genomics

Comparative Genomics

Comparative Genomics. Genomics. DNA (Gene). Transcription. Transcriptomics. RNA. Translation. Functional Genomics. PROTEIN. Proteomics. Enzymatic reaction. METABOLITE. Metabolomics. What is Comparative Genomics?. It is the comparison of one genome to another.

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955 views • 19 slides
Presented by Rhee, Je-Keun Graduate Program in Bioinformatics

Presented by Rhee, Je-Keun Graduate Program in Bioinformatics

Identification of cell cycle-related regulatory motifs using a kernel canonical correlation analysis. Presented by Rhee, Je-Keun Graduate Program in Bioinformatics Center for Biointelligence Technology (CBIT) Biointelligence Laboratory Seoul National University. Contents. Introduction

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292 views • 18 slides
Presented by Rhee, Je-Keun Graduate Program in Bioinformatics

Presented by Rhee, Je-Keun Graduate Program in Bioinformatics

Identification of cell cycle-related regulatory motifs using a kernel canonical correlation analysis. Presented by Rhee, Je-Keun Graduate Program in Bioinformatics Center for Biointelligence Technology (CBIT) Biointelligence Laboratory Seoul National University. Contents. Introduction

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187 views • 18 slides
A turbo intro to (the bioinformatics of) microRNAs 11/6 2009 Peter Hagedorn

A turbo intro to (the bioinformatics of) microRNAs 11/6 2009 Peter Hagedorn

A turbo intro to (the bioinformatics of) microRNAs 11/6 2009 Peter Hagedorn. Discovery of microRNA. The first described microRNA , lin-4 , was cloned and characterised as a translational repressor of developmental timing from C. elegans by Lee et al (1993) and Wightman et al (1993).

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275 views • 17 slides
SUS2 ( At5g49190)

SUS2 ( At5g49190)

SUS1 (At5g20830). SUS2 ( At5g49190). Seed specific. Fig. S1. SUS3 (At4g02280). Dry seed. Senescing leaf. Flowers. SUS4 (At3g43190). SUS5 (At5g37180). SUS6 (At1g73370). A). Dendogram of protein similarity. Heatmap bicluster of promotor elements. B). Fig. S2.

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102 views • 3 slides

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