'Chip seq' presentation slideshows

Stoyan Georgiev advisors: Uwe Ohler and Sayan Mukherjee

Identification of regulatory elements using high-throughput binding evidence. Inference of population structure on large genetic data sets. Stoyan Georgiev advisors: Uwe Ohler and Sayan Mukherjee Computational Biology and Bioinformatics, Duke University February 2011. Outline.

1.18k views • 99 slides

Bioinformatic Analysis of Chromatin Genomic Data

Bioinformatic Analysis of Chromatin Genomic Data. Giulio Pavesi University of Milano giulio.pavesi@unimi.it. Epigenetics. Modern experimental techniques and technologies allow for the genome-wide study of different types of histone modifications, shedding light on the role of each one.

872 views • 68 slides

788 views • 64 slides

NGS data analyses with BioUML

795 views • 64 slides

Lecture 13

591 views • 50 slides

ChIP-Seq

829 views • 50 slides

Evaluation of Signaling Cascades Based on the Weights from Microarray and ChIP-seq Data

604 views • 49 slides

Genomics and High Throughput Sequencing Technologies: Applications

Genomics and High Throughput Sequencing Technologies: Applications. Jim Noonan Department of Genetics. Outline. Personal genome sequencing. Rationale: understanding human disease Variant discovery and interpretation Genome reduction strategies ( exome sequencing ).

657 views • 40 slides

511 views • 39 slides

Next Generation Sequencing

Next Generation Sequencing. Sequencing techniques. ChIP-seq MBD-seq (MIRA-seq) BS-seq RNA-seq miRNA-seq. ChIP-seq. ChIP-Seq is a new frontier technology to analyze in vivo protein-DNA interactions. ChIP-Seq

834 views • 37 slides

ChIP-Seq: TB Example

ChIP-Seq: TB Example. James Galagan. Acknowledgements. SBRI CHIP Kyle Minch Tige Rustad David Sherman. Broad, BU Seq and Analysis Brian Weiner Matt Petersen Desmond Lun. ChIP-Seq. Sequence Fragments Align to Genome Look for Enrichment. Target Site. IP. Control. Immuno-

481 views • 37 slides

Transcription Factor Motif / Module Finding

Transcription Factor Motif / Module Finding. Xiaole Shirley Liu STAT115, STAT215. Motif Matrix. Pos 12345678 ATGGCATG AGGGTGCG ATCGCATG TTGCCACG ATGGTATT ATTGCACG AGGGCGTT ATGACATG ATGGCATG ACTGGATG. Segment ATGCAGCT score =

444 views • 31 slides

ChIP-seq

ChIP-seq. Xiaole Shirley Liu STAT115, STAT215. ChIP-chip/seq Technology. Chromatin ImmunoPrecipitation + microarray or high throughput sequencing Detect genome-wide in vivo location of TF and other DNA-binding proteins Find all the DNA sequences bound by TF-X?

586 views • 30 slides

357 views • 27 slides

Chromatin Immunoprecipitation DNA Sequencing (ChIP-seq)

Chromatin Immunoprecipitation DNA Sequencing (ChIP-seq). Roche 454 (2nd) Illumina Solexa(2nd) ABI SoLid (2nd) Helicos (3rd). Applications De novo sequencing Targeted resequencing Digital Gene Expression (DGE) RNA-seq ChIP-seq. 2nd and 3rd Generation DNA Sequencers and Applications.

457 views • 23 slides

EDACC Quality Characterization for Various Epigenetic Assays

EDACC Quality Characterization for Various Epigenetic Assays. Cristian Coarfa Bioinformatics Research Laboratory Molecular and Human Genetics. ChIP-Seq Methyl-C RRBS MRE-Seq MeDIP-Seq Chromatin Accessibility small RNA-Seq mRNA-Seq. Data Types Submitted To EDACC.

299 views • 22 slides

Functional Genomics with R

350 views • 20 slides

Paulo Arruda 02-06-2011

270 views • 16 slides

Integrating the Bioinformatic Technology Group into your research programme

Integrating the Bioinformatic Technology Group into your research programme. BHRC Away day, Jan 2011. Introduction People and Skills Examples Integrating the BTG Contacts. Introduction. Group of quantitative researchers We are biologists that use a different set of tools

203 views • 11 slides

Genome-wide Identification of Craniofacial Transcriptional Enhancers

163 views • 2 slides