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Lab Meeting Dec. 20 2009. Works since the last meeting (Dec. 14 2009). 1. Prepared for the committee meeting - made powerpoint slides - manuscripts 2. Prepared PAG meeting - modified some of GDR pages unigene, voting forms and some of CGIs 3. After PAG

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slide2

Works since the last meeting (Dec. 14 2009)

1. Prepared for the committee meeting

- made powerpoint slides

- manuscripts

2. Prepared PAG meeting

- modified some of GDR pages

unigene, voting forms and some of CGIs

3. After PAG

- add direction of features on tracks (temporally)

- removed all buttons in HTML tag.

created all buttons in SVG

http://www.bioinfo.wsu.edu/cgi-bin/gdr/apl/apl.cgi

Taein Lee mainlab

slide3

e-value high low

Suggested functions(from the committee meeting)

  • save track order
  • copy all features on an evidence track to the custom track*
  • add sequence length

- show the length of a sequence in task and SVG info. Dialogs.

- added a function to validate input sequence for FASTA format

  • show alignments **
  • highlight sequence**
  • add a filtering function on tracks. Each track has different filters

(ex)

EST track

set threshold on evalue/score/identity

  • add color schema for each track.

(ex) features on EST track

Taein Lee mainlab

slide4

works needed to be done soon

  • Last presentation

- slides

- manuscripts

- demo video

  • Tools

- add suggested functionalities

- set goals

  • Hort 480 genomics
  • I need to ask to install 2 gene finding tools
  • GeneMark
  • GeneMark.hmm eukaryotic
  • http://exon.biology.gatech.edu/license_download.cgi
  • Glimmer M
  • Glimmer 3.02
  • http://www.cbcb.umd.edu/software/glimmer/

Taein Lee mainlab