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PubMed Tips and Tricks

PubMed Tips and Tricks. Boost Box / July 2013 Kate Flewelling , NN/LM MAR. Is this you?. Save time with preformulated PubMed searches and filters!. Where are preformulated PubMed searches?. Everywhere in the NLM-universe! PubMed Topic-Specific Queries MedlinePlus Health Topic Pages

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PubMed Tips and Tricks

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  1. PubMed Tips and Tricks Boost Box / July 2013 Kate Flewelling, NN/LM MAR

  2. Is this you?

  3. Save time with preformulated PubMed searches and filters!

  4. Where are preformulated PubMed searches? • Everywhere in the NLM-universe! • PubMed Topic-Specific Queries • MedlinePlus Health Topic Pages • PhPartners.org Structured Evidence Queries • Genetics Home Reference Conditions • Drug Information Portal • ClinicalTrials.gov

  5. Access Topic-Specific Queries fromPubMed Home Page

  6. Topic-Specific Querieshttp://www.nlm.nih.gov/bsd/special_queries.html • Clinicians and Health Services Researchers Queries • Clinical Queries • Electronic Health Records • Comparative Effectiveness Research • Health Services Research (HSR) Queries • Cancer Topic Searches • Healthy People 2020 • Subjects • Additional Search Queries/Interfaces

  7. PubMed Clinical Queries • Available from the PubMed Home page • Therapy • Diagnosis • Etiology • Prognosis • Clinical Prediction Guides • Search filters: http://1.usa.gov/1bj4De4 • Systematic Review • Search filter: http://1.usa.gov/184vDzf

  8. Medical Genetics • Available from PubMed Clinical Queries • Developed in conjunction with the staff of GeneReviews: Genetic Disease Online Reviews at GeneTests, University of Washington, Seattle • Topics: • Diagnosis • Differential Diagnosis • Clinical Description • Management • Genetic Counseling • Molecular Genetics • Genetics Testing • All

  9. Example: Sickle Cell Disease

  10. Electronic Health Records • PubMed search • Links to EHR information Resources • http://1.usa.gov/1dbqfHo

  11. Comparative Effectiveness • Tries to Answer: What Works? • Special PubMed Search Interface • Can also search for: • Health Services Research Projects • Clinical Trials • http://www.nlm.nih.gov/nichsr/cer/cerqueries.html

  12. Comparative Effectiveness Interface • Search with filter: 733 • Search without filter: 1446

  13. Health Services Research (HSR) PubMed Queries • Special Interface to search • http://1.usa.gov/18J0uRb • Appropriateness • Process assessment • Outcomes assessment • Costs • Economics • Qualitative research • Quality Improvement

  14. HSR PubMed Queries

  15. Cancer Topic Searches • Over 100 different topics • From the National Cancer Institute • http://www.cancer.gov/cancertopics/litsearch

  16. Healthy People 2020: Structured Evidence Queries • Developed by public health librarians and subject matter experts • Updated and Refined over time • Usually limits to United States, humans, English and last 5 years • http://phpartners.org/hp2020/

  17. Structured Evidence Queries: Topic Areas • Access to Health Services • Adolescent Health • Arthritis, Osteoporosis, and Chronic Back Conditions • Blood Disorders and Blood Safety - beta • Chronic Kidney Disease • Dementias, Including Alzheimer's Disease • Diabetes • Early and Middle Childhood • Environmental Health - beta • Family Planning • Food Safety • Genomics • Health Communication and Health IT • Healthcare-Associated Infections • Heart Disease and Stroke - beta • HIV - beta • Maternal, Infant, and Child Health • Medical Product Safety • Mental Health and Mental Disorders • Nutrition and Weight Status • Occupational Safety and Health - beta • Oral Health • Physical Activity • Preparedness • Respiratory Diseases - beta • Sexually Transmitted Diseases - beta • Sleep Health • Substance Abuse • Tobacco Use • Vision

  18. Example: Smoking Cessation Objective PubMed Search • TU-1 Reduce tobacco use by adults • ("tobacco use disorder/prevention and control"[Mesh Terms] OR "tobacco, smokeless"[MeSH Terms] OR "smoking/prevention and control"[Mesh Terms]) AND ("primary prevention"[MeSH Terms] OR "attitude to health"[MeSHTerms:noexp] OR "community health services"[MeSH Terms] OR "health behavior"[MeSH Terms] OR "health education"[MeSH Terms] OR "health knowledge, attitudes, practice"[MeSH Terms] OR "health policy"[MeSH Terms] OR "health promotion"[MeSH Terms] OR "risk reduction behavior"[MeSH Terms] OR "preventive health services"[MeSH Terms] OR "program evaluation"[MeSH Terms] OR "national health programs"[MeSH Terms] OR "patient education as topic"[MeSH Terms]) AND "adult"[MeSH Terms] NOT ((adolescence[ti] OR adolescence/early[ti] OR adolescence/young[ti] OR adolescence/youth[ti] OR adolescence'[ti] OR adolescence's[ti] OR adolescences[ti] OR adolescencet[ti] OR adolescene[ti] OR adolescens[ti] OR adolescense[ti] OR adolescent[ti] OR adolescent/adolescence[ti] OR adolescent/adult[ti] OR adolescent/early[ti] OR adolescent/little[ti] OR adolescent/teenage[ti] OR adolescent/young[ti] OR adolescent'[ti] OR adolescent's[ti] OR adolescente[ti] OR adolescentes[ti] OR adolescenthood[ti] OR adolescentis[ti] OR adolescentium[ti] OR adolescentological[ti] OR adolescentology[ti] OR adolescentology's[ti] OR adolescents[ti] OR adolescents/adults[ti] OR adolescents/young[ti] OR adolescents'[ti] OR adolescentum[ti]) OR youth[ti] OR (teen[ti] OR teen/parent[ti] OR teen/twen[ti] OR teen's[ti] OR teena[ti] OR teenage[ti] OR teenaged[ti] OR teenagehealthfreak[ti] OR teenagehood[ti] OR teenager[ti] OR teenager's[ti] OR teenagers[ti] OR teenagers/young[ti] OR teenagers'[ti] OR teenapain[ti] OR teenargers[ti] OR teenase[ti] OR teendiab[ti] OR teendoc[ti] OR teenears[ti] OR teenek[ti] OR teeneks[ti] OR teenhealth[ti] OR teenhealthfx[ti] OR teenis[ti] OR teenline[ti] OR teennet[ti] OR teens[ti] OR teens'[ti] OR teenscreen[ti] OR teenstar[ti] OR teent[ti] OR teenw[ti] OR teenweb[ti] OR teeny[ti])) NOT "environmental exposure"[MeSH Terms] AND ("united states"[MeSH Terms] OR USA[ad] OR "united states public health service"[MeSH Terms] OR research support, u.s. gov't, p.h.s.[pt] OR Research Support, U.S. Gov't, Non-P.H.S.[pt]) AND English[la] AND "2010/07/03"[dp] : "2013/07/01"[dp]

  19. Topic-Specific Queries: Subjectshttp://www.nlm.nih.gov/bsd/special_queries.html • Clinicians and Health Services Researchers Queries • Subjects • AIDS • Bioethics • Cancer • Complementary Medicine • Dietary Supplements • Health Disparities • Health Literacy • History of Medicine • Research Reporting Guidelines and Initiatives • Space Life Sciences • Smallpox • Toxicology • Veterinary Science • Additional Search Queries/Interfaces Special search strategies developed by NLM, often in conjunction with other agencies, such as Office of Dietary Supplements and NASA

  20. Many are available as Subjects filters • AIDS • Bioethics • Cancer • Complementary Medicine • Dietary Supplements • History of Medicine • Systematic Reviews • Toxicology • Veterinary Science

  21. Others are available just from the Special Queries Page • Health Disparities • Health Literacy • Research Reporting Guidelines and Initiatives • Space Life Sciences • Smallpox • Most have links to additional resources, in addition to a PubMed Search. • Veterinary Science is available from Filters but use Special Queries page for more resources.

  22. Topic-Specific Queries: Additionalhttp://www.nlm.nih.gov/bsd/special_queries.html • Clinicians and Health Services Researchers Queries • Subjects • Additional Search Queries/Interfaces • ALTBIB • CAM on PubMed [same as Complementary Medicine subject] • MedlinePlusHealth Topics • National Institutes of Health Funding Support • Retracted Publication • TOXNET

  23. ALTBIB: Alternatives to Animal Testing(http://toxnet.nlm.nih.gov/altbib.html)

  24. MedlinePlus • PubMed search on each Health Topic included under Journal Articles • Created by reference librarians at NLM • Limited to English, humans, 1 year • Excludes Letters and Editorials publication types

  25. Example: Cleft Lip and Palate

  26. PubMed Search from MedlinePlus • Search Details: ("cleft lip"[MeSH Major Topic] OR "cleft palate"[MeSH Major Topic] OR "palatal obturators"[MeSH Major Topic]) AND "humans"[MeSH Terms] AND english[la] AND (review[pt] OR guideline[pt] OR clinical trial[pt] OR jsubsetk[text] OR jsubsetaim[text] OR jsubsetn[text] OR patient education handout[pt]) NOT (letter[pt] OR editorial[pt]) AND "2012/07/03"[edat] : "2013/07/02"[edat]

  27. NIH Funding Support Strategy: NIH[gr] OR Research Support, American Recovery and Reinvestment Act[pt] OR Research Support, N.I.H., Extramural[pt] OR Research Support, N.I.H., Intramural[pt]

  28. Retracted Publication • Retracted publication [pt]

  29. TOXNET (http://toxnet.nlm.nih.gov/)

  30. Search All Databases Click on Toxicology Literature Online to see PubMed and other records.

  31. Search Results Results include PubMed results and citations to: Government reports International Agency for Research on Cancer (IARC) Monographs WHO resources Other materials Click Sort to sort by publication date.

  32. PubMed citations include links to PubMed

  33. Where to find other PubMed searches? • Everywhere in the NLM-universe! • PubMed Topic-Specific Queries • MedlinePlus Health Topic Pages • PhPartners.org Structured Evidence Queries • Genetics Home Reference Conditions • Drug Information Portal • ClinicalTrials.gov

  34. Genetics Home Reference(http://ghr.nlm.nih.gov/)

  35. Drug Information Portal http://druginfo.nlm.nih.gov/

  36. ClinicalTrials.gov • Study Records Link to Publications(when available)

  37. And librarians create search hedges, too!

  38. Developing Countries • Developed by Mellanye Lackey, UNC-Chapel Hill • http://guides.lib.unc.edu/globalhealthtoolkit (on the bottom of the page) • Copy and paste search into PubMed

  39. Keep Up with PubMed • MAR and National Training Center training • Making PubMed Work for You (online: December 2013) • PubMed for Experts (in-person: invite me! or go to MAC-MLA 2013) • PubMed for Librarians (online) • Register: http://nnlm.gov/ntcc/classes/schedule.html • PubMed for Trainers (Hybrid) • Register: http://nnlm.gov/ntcc/classes/schedule.html • PubMed Tutorials: http://www.nlm.nih.gov/bsd/disted/pubmed.html • NLM Technical Bulletin: http://www.nlm.nih.gov/pubs/techbull/

  40. Questions?

  41. Thank you! Kate Flewelling, MLIS National Network of Libraries of Medicine, Middle Atlantic Region http://nnlm.gov/mar/ flewkate@pitt.edu This project has been funded in whole or in part with Federal funds from the National Library of Medicine, National Institutes of Health, Department of Health and Human Services, under Contract No. HHS-N-276-2011-00003-Cwith the University of Pittsburgh, Health Sciences Library System.

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