Chapter 13 - The Citric Acid Cycle

1. Chapter 13 - The Citric Acid Cycle • The citric acid cycle is involved in the aerobiccatabolism of carbohydrates, lipids and amino acids • Intermediates of the cycle are starting points for many biosynthetic reactions • Enzymes of the cycle are in the mitochondria of eukaryotes • Energy of the oxidation reactions is largely conserved as reducingpower (stored electrons) • Coenzymes reduced: • NAD+ NADH • FAD FADH2 • Ubiquinone (Q) Reduced Ubiquinone (QH2)

2. Transport of Pyruvate from the cytosol into the Mitochondria • Pyruvate translocase transports pyruvate into the mitochondria in symport with H+ Pyruvate dehydrogenase complex

3. Conversion of Pyruvate to Acetyl CoA • Pyruvate dehydrogenase complex is a multienzyme complex containing: • 3 enzymes + 5 coenzymes + other proteins • E1 = pyruvate dehydrogenase • E2 = dihydrolipoamide acetyltransferase • E3 = dihydrolipoamide dehydrogenase

4. Components of the PDH Complex in mammals and E. coli Chapter 12

5. Fig 13.1 Reactions of the PDH complex

6. Fig 13.1 Reactions of the PDH complex

7. Fig 13.1 Reactions of the PDH complex Acetylated lipoamide

8. Fig 13.1 Reactions of the PDH complex TCA cycle Reduced lipoamide

9. Fig 13.1 Reactions of the PDH complex Oxidized lipoamide

10. Fig 13.1 Reactions of the PDH complex Oxidized lipoamide

11. Fig 13.1 Reactions of the PDH complex Acetylated lipoamide

12. Fig 13.1 Reactions of the PDH complex TCA cycle Reduced lipoamide

13. Fig 13.1 Reactions of the PDH complex Oxidized lipoamide

14. The Citric Acid Cycle Oxidizes AcetylCoA • Table 13.1

15. Summary of the citric acid cycle • For each acetyl CoA which enters the cycle: • (1) Two molecules of CO2 are released • (2) Coenzymes NAD+ and Q are reduced • to NADH and QH2 • (3) One GDP (or ADP) is phosphorylated • (4) The initial acceptor molecule (oxaloacetate) is reformed Chapter 12

16. Fig 13.5 • Citric acid cycle

17. Fig 13.5

18. Fig 13.5

19. 6. The Succinate Dehydrogenase (SDH) Complex • Located on the inner mitochondrial membrane, in contrast to other enzymes of the TCA cycle which are dissolved in the mitochondrial matrix • Complex of polypeptides, FAD and iron-sulfur clusters • Electrons are transferred from succinate to FAD, forming FADH2, then to ubiquinone (Q), a lipid-soluble mobile carrier of electrons • Reduced ubiquinone (QH2) is released as a mobile product

20. Fig 12.4

21. Fates of carbon atoms in the cycle • 6C5C4C

22. Energy conservation by the cycle • Energy is conserved in the reduced coenzymes NADH, QH2 and one GTP • NADH, QH2 can be oxidized to produce ATP by oxidative phosphorylation

23. Glucose degradation via glycolysis, citric acid cycle, and oxidative phosphorylation

24. Regulation of the Citric Acid Cycle • The citric acid cycle is controlled by: • (1) Allosteric modulators • (2) Covalent modification of cycle enzymes • (3) Supply of acetyl CoA • (4) Regulation of pyruvate dehydrogenase complex controls acetyl CoA supply Chapter 12

25. Fig 13.11Regulation of the pyruvate dehydrogenase complex • Increased levels of acetyl CoA and NADH inhibit E2, E3 • Increased levels of CoA and NAD+ activate E2, E3

26. Fig 13.12 Regulation of mammalian PDH complex by covalentmodification • Phosphorylation/dephosphorylation of E1

27. Regulation of isocitrate dehydrogenase • MammalianICDH • Activated by calcium (Ca2+) and ADP • Inhibited by NADH (-) + + NAD+ NADH Chapter 12

28. Regulation of thecitric acid cycle Chapter 12

29. Entry and Exit of Metabolites • Intermediates of the citric acid cycle are precursors for carbohydrates, lipids, amino acids, nucleotides and porphyrins • Reactions feeding into the cycle replenish the pool of cycle intermediates Chapter 12

30. Fig 13.20

31. The Glyoxylate Cycle • Pathway for the formation of glucose from noncarbohydrate precursors in plants, bacteria and yeast (not animals) • Glyoxylate cycle leads from 2-carbon compounds to glucose • In animals, acetyl CoA is not a carbon source for the net formation of glucose (2 carbons of acetyl CoA enter cycle, 2 are released as 2 CO2) • Allows for the formation of glucose from acetyl CoA • Ethanol or acetate can be metabolized to acetyl CoA and then to glucose via the glyoxylate cycle • Stored seed oils in plants are converted to carbohydrates during germination

32. Fig 13.21 The Glyoxylate Cycle bypasses the twodecarboxylation stepsof the citric acid cycle,conserving the carbon atoms as glyoxylate for synthesis of glucose. Germinating seeds use this pathway to synthesize sugar (glucose) from oil (triacylglycerols).