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Genomic Boundary Prediction Evaluation: Coalescence Point iScan Results

Discussion about Coalescence Point iScan results on predicting genetic boundaries, with analysis of memory usage and running time performance. Initial lab meeting findings reveal only 7 out of 101 predicted genes were correct, with trends of refseq genes crossing boundaries within introns. Notable differences in performance between predicted and reference genes observed.

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Genomic Boundary Prediction Evaluation: Coalescence Point iScan Results

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  1. Coalescence Point Iscan Results Lab meeting 12-8-04

  2. Memory Usage

  3. Running Time

  4. Performance

  5. Cp iscan border genes • 91 predicted tx cross 1MB boundaries (437 total boundaries) • 101 refseq tx cross 1MB boundaries • Only 7 correct predicted Txs • The refseqs tend to cross these boundaries in very long introns. • 97 of 101 cross in an intron and the average length is 52477 (refseq average is 4600)

  6. Examples

  7. Differences

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