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Enabling Academic Research: Office Add-ins. Alex Wade Director – Scholarly Communication Microsoft External Research. Interactive Data. Collaboration. Dynamic Documents. Reputation & Influence. Envisioning a New Era of Research Reporting. Imagine…

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enabling academic research office add ins

Enabling Academic Research:Office Add-ins

Alex Wade

Director – Scholarly Communication

Microsoft External Research

envisioning a new era of research reporting

Interactive Data

Collaboration

DynamicDocuments

Reputation

& Influence

Envisioning a New Era of Research Reporting

Imagine…

  • Live research reports that had multiple end-user ‘views’ and which could dynamically tailor their presentation to each user
  • An authoring environment that absorbs and encapsulates research workflows and outputs from the lab experiments
  • A report that can be dropped into an electronic lab workbench in order to reconstitute an entire experiment
  • A researcher working with multiple reports on a Surface and having the ability to mash up data and workflows across experiments
  • The ability to apply new analyses and visualizations and to perform new in silico experiments

Reproducible

Research

office 2007 file formats
Office 2007 File Formats
  • Office Open XML (OOXML)
    • .docx, .xlsx, .pptx
    • ZIP compatible Open Packaging Convention (OPC) container
    • XML content, as well as other file formats
programmer view of open xml files
Programmer View of Open XML Files
  • ZIP Archive
  • Document Parts
    • XML Parts
    • Binary Parts
    • Typed (RFC 2616)
  • Relationships
    • Connections between parts
  • Content Type Stream
    • A specially-named stream
    • Defines mappings from part names to content types
    • Not itself a part, not URI addressable
  • Folder structure for convenience only
developer scenario content inspection
Developer Scenario: Content Inspection

Remove confidential information, tracked changes or metadata from outbound documents:

Remove macros, inappropriate language, or other content from inbound documents:

Open XML

Processing

Open XML

Processing

development scenario consuming documents
Development Scenario: Consuming Documents

Create expense reports as spreadsheet documents, which are loaded into a back-end system on the server:

Authoring environment(Microsoft Office, etc.)

Open XML

Processing

Back-end system(LOB/CRM/etc.)

development scenario document assembly
Development Scenario: Document Assembly

Create sales reports from financial and forecast data stored in a CRM system:

Web client or rich clientallows user to select orenter content criteria

development scenario custom xml markup
Development Scenario: Custom XML Markup

Tagging document content with custom semantics for processing by a back-end system.

Authoring environment

Open XML

Processing

custom xml data store
Custom XML Data Store

Doc/Template

  • Custom-defined XML part
  • Stored separately from document body
  • Any XML can be stored
    • Document properties
    • WSS meta-data
    • Custom XML (with or without XML schema)
  • External applications can easily read or write the custom XML part
  • True separation of data and presentation

Doc Parts

XML

External App

openxmldeveloper org
OpenXmlDeveloper.org
  • Formed by 40 companies to share developer information about the Office Open XML file formats
  • Articles with full source code for C#, VB, Java, XSLT
  • Forums for posting technical questions
creative commons add in for office
Creative Commons Add-in for Office

Intent: Insert Creative Commons licenses from within Office 2007

Services: Integrates with Creative Commons Web API to create new licenses

Relationships: license information stored as RDF XML within the document OOXML

Source code and binary:

http://ccaddin2007.codeplex.com

article authoring add in for word 2007
Article Authoring Add-in for Word 2007

Services: repository deposit via SWORD

Structure: Read, convert, and author NLM XML documents

Relationships: ORE Resource Map creation

Relationships: Citation lookup and reference management

Structure: Client-side XML validation

Binary (v.2 beta 3):

http://research.microsoft.com/authoring/

This work is licensed under a Creative Commons Attribution 3.0 United States License.

evolving publishing landscape
Evolving Publishing Landscape
  • Scientific, Technical, and Medical publishing (STM)
  • Accelerating move to electronic publishing and consumption of journals
    • Semantics over presentation at authoring
  • Open Access publishing and repositories
    • High Energy Physics – arXiv.org
    • Biomedical – PubMed Central
pubmed central
PubMed Central
  • National Institute of Health’sNational Library of Medicine
    • PubMed Central repository
    • Archiving mandated by law as part of funding
    • Conversion usually done by publisher
  • NLM XML formats
    • Light on presentation, extensive metadata
    • Used in the publishing and archiving process, even outside of biomed
    • Article publishing and book formats
key add in functionality
Key Add-in Functionality
  • Opening and saving of NLM XML files
    • Preserving metadata and semantics
  • Article templates
    • Simplify authoring experience
    • Package and convey requirements to authors
  • Metadata access and editing
    • Author view - simple
    • Editor view - extensive
author and editor experience
Author and Editor Experience
  • For Authors - rely on native Word functionality/concepts as much as possible
    • Add-in and file formats should be invisible
    • Try to gather metadata from authors
      • Reduce data entry errors
  • Provide Editors and staff with full access to metadata, format concepts, and validation
    • Likely to know at least parts of the format or metadata in depth
    • Need full extent of the format presented in the UI
word building blocks
Word Building Blocks
  • Custom ribbon
  • Side Panel
  • InfoPath integration
  • Content control and custom elements
  • Format SDK and packaging functionality
  • MathML XSLT (two way)
additional capabilities
Additional Capabilities
  • Direct upload/submission from Word using the Authoring Add-in through SWORD
    • Simplified experience for authors
    • Some data validation before submission
    • Data ready for use by intake infrastructure
  • Embedding data within articles and referencing data stored online based on ORE
    • Enable an additional dimension to the content
status
Status
  • Version 2 Beta 3 available for free download
    • http://research.microsoft.com/authoring/
  • Great community participation and engagement
    • Valuable feedback from the National Library of Medicine, Hindawi Publishing, and other Beta participants
chem4word chemistry drawing in word
Chem4Word - Chemistry Drawing in Word

Author/edit 1D and 2D chemistry. Change chemical layout styles.

  • Peter Murray-Rust
  • Joe Townsend
  • Jim Downing

Intent: Recognizes chemical dictionary and ontology terms

Relationships: Navigate and link referenced chemistry

Data: Semantics stored in Chemistry Markup Language

<?xmlversion="1.0" ?>

<cmlversion="3" convention="org-synth-report" xmlns="http://www.xml-cml.org/schema">

<moleculeid="m1">

<atomArray>

<atomid="a1" elementType="C" x2="-2.9149999618530273" y2="0.7699999809265137" />

<atomid="a2" elementType="C" x2="-1.5813208400249916" y2="1.5399999809265137" />

<atomid="a3" elementType="O" x2="-0.24764171819695613" y2="0.7699999809265134" />

<atomid="a4" elementType="O" x2="-1.5813208400249912" y2="3.0799999809265137" />

<atomid="a5" elementType="H" x2="-4.248679083681063" y2="1.5399999809265137" />

<atomid="a6" elementType="H" x2="-2.914999961853028" y2="-0.7700000190734864" />

<atomid="a7" elementType="H" x2="-4.248679083681063" y2="-1.907348645691087E-8" />

<atomid="a8" elementType="H" x2="1.0860374036310796" y2="1.5399999809265132" />

</atomArray>

<bondArray>

<bondatomRefs2="a1 a2" order="1" />

<bondatomRefs2="a2 a3" order="1" />

<bondatomRefs2="a2 a4" order="2" />

<bondatomRefs2="a1 a5" order="1" />

<bondatomRefs2="a1 a6" order="1" />

<bondatomRefs2="a1 a7" order="1" />

<bondatomRefs2="a3 a8" order="1" />

</bondArray>

</molecule>

</cml>

Intelligence: Verifies validity of authored chemistry

Available soon:

http://research.microsoft.com/chem4word/