1 / 12

Gully APC Burns, Jessica A Turner

Bottom -up curation of terminology for experimental variables: the Ontology of Experimental Variables and Values ( OoEVV ). Gully APC Burns, Jessica A Turner . Science is Cyclic. Cycles of Scientific Investigation ( ‘ CoSI ’ model).  ☐ ☐ ☐☐ ☐☐ ☐☐ ☐. Focus on Experimental V ariables.

kaoru
Download Presentation

Gully APC Burns, Jessica A Turner

An Image/Link below is provided (as is) to download presentation Download Policy: Content on the Website is provided to you AS IS for your information and personal use and may not be sold / licensed / shared on other websites without getting consent from its author. Content is provided to you AS IS for your information and personal use only. Download presentation by click this link. While downloading, if for some reason you are not able to download a presentation, the publisher may have deleted the file from their server. During download, if you can't get a presentation, the file might be deleted by the publisher.

E N D

Presentation Transcript

  1. Bottom-up curation of terminology for experimental variables: the Ontology of Experimental Variables and Values (OoEVV) Gully APC Burns, Jessica A Turner

  2. Science is Cyclic Cycles of Scientific Investigation (‘CoSI’ model) ☐ ☐☐☐ ☐☐☐☐☐

  3. Focus on Experimental Variables ‘CDNF protects nigral dopaminergic neurons in-vivo’ This statistically-significant effect is the experimental basis for the findings of this study. from Lindholm, P. et al. (2007), Nature, 448(7149): p. 73-7 Cycles of Scientific Investigation (‘CoSI’ model) ☐☐☐☐ ☐☐☐☐☐

  4. Capturing Experimental Variables in Context http://www.bioscholar.org/ Knowledge Engineering from Experimental Design (KEfED) ☐☐ ☐ ☐☐☐☐☐

  5. Knowledge Engineering from Experimental Design (‘KEfED’) Khan et al. (2007), J. Neurosci. 27:7344-60 [expt 2] Knowledge Engineering from Experimental Design (KEfED) ☐☐ ☐ ☐☐☐☐☐

  6. OoEVV Basic Design Mathematical encoding of the variable Quality being measured (conceptual, no encoding) Variable measuring the quality 1 1 * * Scale Quality Variable ‘Handedness’ Simple-handedness-category [‘left’, ‘right’, ‘ambidextrous’] Edinburgh-handedness-score [ -100 … +100 ] Ontology of Variables and Values (OoEVV) ☐☐☐☐ ☐☐☐☐

  7. OoEVVImplementation Ontology of Variables and Values (OoEVV) ☐☐☐☐ ☐☐☐☐

  8. Measurement Scales Ontology of Variables and Values (OoEVV) ☐☐☐☐ ☐☐☐☐

  9. Software Development Ontology of Variables and Values (OoEVV) ☐☐☐☐ ☐☐☐☐

  10. OoEVVSoftware http://www.isi.edu/projects/ooevv/ooevv_software Ontology of Variables and Values (OoEVV) ☐☐☐☐ ☐☐☐☐

  11. OoEVV Viewer Ontology of Variables and Values (OoEVV) ☐☐☐☐ ☐☐☐☐

  12. Acknowledgements BMKEG@ISI Marcelo Tallis Drashti Dave Ed Hovy Biomedical Informatics Research Network (BIRN) Joe Ames Jose Luis Ambite Naveen Ashish Funding FBIRN: RR021992 BIRN: RR025736 CogPO: MH084812 BioScholar: GM083871 Thank you for listening!

More Related