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EMBOSS over a Grid. Eduardo MURRIETA LEON Romualdo ZAYAS LAGUNAS Pierre-Alain BRANGER Jérôme VERLEYEN Roberto RODRIGUEZ César BONAVIDES Alfredo HERNANDEZ. 1st EELA Grid School. December 6th of 2006. Installation. Uncompress EMBOSS-latest.tar.gz configure, make, make install

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1st eela grid school

EMBOSS over a Grid

Eduardo MURRIETA LEON

Romualdo ZAYAS LAGUNAS

Pierre-Alain BRANGER

Jérôme VERLEYEN

Roberto RODRIGUEZ

César BONAVIDES

Alfredo HERNANDEZ

1st EELA Grid School

December 6th of 2006

installation
Installation
  • Uncompress EMBOSS-latest.tar.gz
  • configure, make, make install
  • Installation of embassy (non EMBOSS tools)
  • Setting up DB (4.4GB/3.5hs/20%)
  • Tests, OK!
plan a
Plan A

JDL File

Type = "Job";

JobType = "Normal";

Executable = “seqret";

Arguments = "-outseq“,”salida.fasta”;

StdError = “stderr.err";

InputSandbox = { “seqret”, “*fasta”, “*idx”, … };

OutputSandbox = {“salida.fasta“, “stderr.err”};

UI

CE

WNs

BDII

RB

plan b
Plan B

JDL File

Type = "Job";

JobType = "Normal";

Tag = “EMBOSS-4.0.0”;

Executable = “seqret";

Arguments = "-outseq“,”salida.fasta”;

StdError = “stderr.err";

OutputSandbox = {“salida.fasta“, “stderr.err”};

UI

CE

WNs

BDII

RB

plan c
Plan C

UI

CE

WNs

GFAL

BDII

RB

SE

muito obrigado

!

Muito Obrigado

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