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The RNASeq Genome Annotation Assessment Project. Data Coordination Felix Kokocinski, WTSI. RGASP Submission Stats. Thanks. Issues Testing & annotating input (RNASeq) data Set up of data handling and analysis pipeline Filtering/Qcing pre-submission, choose best (few) methods

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the rnaseq genome annotation assessment project
The RNASeq GenomeAnnotation Assessment Project

Data Coordination

Felix Kokocinski, WTSI

slide2

RGASP Submission Stats

  • Thanks
  • Issues
    • Testing & annotating input (RNASeq) data
    • Set up of data handling and analysis pipeline
    • Filtering/Qcing pre-submission, choose best (few) methods
    • Standard GTF format (exon-transcript-gene relations)
  • Analysis
    • First round results
    • Categorization, alternative approaches to follow
    • Open to everyone?
slide3

RGASP Submission Stats

  • Submitting groups:
    • Human: 12
    • Worm: 9
    • Fly: 7
  • Total submissions: ~ 300
slide5

RGASP Submission Stats

Median File size:

Human 42,822 kb

Worm 37,737 kb

Fly 15,551 kb

slide6

RGASP Submission Stats

Comparing genomic coverage of “exon” features.

GENCODE exons = 6,633,467 bp.

GENCODE CDS = 2,047,429 bp.