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Screenshots of Mutation Impact Ontology for Literature Mining. http://datam.i2r.a-star.edu.sg/mstrap/ A WORKFLOW FOR MUTATION EXTRACTION AND STRUCTURE ANNOTATION http://www.worldscinet.com/jbcb/05/0506/S0219720007003119.html. A. B. Mutant Locus : wNmP

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Screenshots of mutation impact ontology for literature mining

Screenshots of Mutation Impact Ontology for Literature Mining

http://datam.i2r.a-star.edu.sg/mstrap/

A WORKFLOW FOR MUTATION EXTRACTION AND STRUCTURE ANNOTATION

http://www.worldscinet.com/jbcb/05/0506/S0219720007003119.html


Screenshots of mutation impact ontology for literature mining

A Mining

B

Mutant Locus: wNmP

where w is wildtype, m is the mutant residue,

N is position of the wildtype and P is its actual position in the sequence.


Screenshots of mutation impact ontology for literature mining

  • Modifications to the Ontology: 2008 Mining

  • An 'Identifier' class is created to capture

  • the different kinds of id's under one

  • superclass:

  • PubMed_ID => for grounding literature

  • UniProt_ID => for grounding protein names

  • GenBank_ID => for protein sequence

  • PDB_ID => for structure

  • Cosmic_ID => for grounding mutations

  • LiteratureSpecification now allows for

  • capturing different kinds of documents,

  • and also publication date. Both Sentences

  • and paragraphs can now be instantiated.

Ontology

Version2.0

  • Impact details now appear under

  • ImpactSpecification'