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What Can Evolution REALLY Do? How Microbes Can Help Us Find the Answer May 10, 2008. Ralph Seelke, U. Wisconsin-Superior. Where We’re Going. Confessions of an experimentalist who loves making (bacterial) mutants What evolution has been able to accomplish

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what can evolution really do how microbes can help us find the answer may 10 2008
What Can Evolution REALLY Do?How Microbes Can Help Us Find the AnswerMay 10, 2008

Ralph Seelke, U. Wisconsin-Superior

where we re going
Where We’re Going
  • Confessions of an experimentalist who loves making (bacterial) mutants
  • What evolution has been able to accomplish
  • What it has NOT been able to accomplish
  • Some conclusions
two warnings
Two Warnings

1) Do not expect to be overwhelmed.

2) Some of this will get complicated!

four take homes lessons
Four Take-Homes Lessons
  • We really CAN test evolution
  • Two is an evolution stopper
  • Even doing one thing at a time can be a problem for evolution- a gene can “evolve to become unevolveable”
  • God can even use dull, plodding people for his glory
experimental evolution
Experimental Evolution?

???

Source: Ronald Pine, http://home.honolulu.hawaii.edu/~pine/book1-2.html

we can do this absurd experiment with microbes
We Can Do This “Absurd” Experiment With Microbes!

For Evolution to Occur You Need

A LARGE Population and/or

MANY Generations

A Trait That Can Evolve

!!!!BACTERIA!!!!

slide7
Up to 4 TRILLION in a 1 Gal Milk Jug!
  • Thousands of Generations in a Year!
  • COMPLEX Traits!
  • When they evolve, we can FIND THEM!
slide8
Transfer 0.1 ml to new flask

Transfer 0.1 ml to new flask

Inoculate flask

Grow overnight->

Grow overnight->

10 ml broth

You have just produced 6.6 generations of Evolution!

We can produce thousands of generations in a year!

Each Transfer Produces 6.6 generations of evolution!

46 generations per week

Almost 400 per month

Over 2,400 in a year

24,000 in ten years!

we can find evolution because when the microbe evolves it grows or grows better
We can FIND evolution BecauseWhen the microbe EVOLVESitGROWSor GROWS BETTER!!!!
slide11
About 3 mm

MORE Evolution Before your very eyes!

my question
My Question:

Can evolution do two things at once?

  • Can a microbe evolve when two mutational events BOTH have to happen for evolution to occur?
  • Not just my pet question!
  • Acknowledged by evolutionists
  • The fundamental problem of irreducible complexity- 2 or more components, all required for a function, and all required for any function.
why should requiring two changes make evolution difficult
Why Should Requiring Two Changes Make Evolution Difficult?
  • Mutation rates are typically one in 100 million; a teaspoonful of bacteria would have over about 50 mutants!
  • If you need TWO mutations, then the chances of BOTH mutations occurring is 1 in 10,000 trillion!
  • Now you would need a population of 10,000 liters to produce the mutant!
slide14
Is the Need for Two Independent Mutations REALLY an Evolution-Stopper?Studies with the trpA Gene of Escherichia coli
testing the two mutation rule
Testing the Two Mutation Rule
  • Find a well-studied gene, with known mutations that inactivate it.
  • Introduce 1,2,3, or four inactivating mutations
  • Let the gene evolve under highly selective conditions
slide16
60

49

234

175

Source: Hyde, et. al, 1988

The Gene of Choice: trpA (tryptophan synthase A)

Mutation 2

Mutation 1

results so far if evolution requires two or more independent mutations nothing happens
Results So Far:If Evolution Requires Two or More Independent MutationsNOTHING HAPPENS
testing large populations of rs202 5 two mutations for evolution
Testing Large Populations of RS202-5 (two mutations)for Evolution:
  • Test in liquid culture: about 1 trillion cells tested without evidence of evolution.
  • Test on agar plates: ~1.2-2.4 trillion cells tested without evidence of evolution.
  • RS201-2 (mutation one) routinely produced 10-20 Trp+ colonies/plate, 104/ml Trp+ cells/ml in liquid culture.
  • No evidence of evolution of RS202-5
results of serial transfer
Results of Serial Transfer
  • One culture lost its trpAB genes within 275 generations.
  • Two additional cultures have been tested for ~870 transfers, or about 5,700 generations
  • No Trp+ evolution observed. The dead trpA gene after 2,000 generations is identical to the original, dead gene.
  • HOWEVER….
slide24
We thought that BOTH mutations inactivated trpA, but only Mutation 1 did; Mutation 2 only weakened the gene

When we made a version with just Mutation two- the gene was not completely dead!

weakTrpA

why was this a big deal it meant that our gene with two mutations should have evolved
Why was this a big deal? It meant that our gene with two mutations should have evolved!

Selection because of fitness advantage

Mutation

M1, M2

Dead TrpA

M1, M2

Weak TrpA

THIS DOES NOT HAPPEN!!

Evolution not only can’t do two things at a time, in this case it can’t do one thing at a time!

M1, M2

Strong TrpA

Population of fully Trp+ cells

so why didn t our gene evolve
So why didn’t our gene evolve??

Maybe, while it was evolving, the expression of the weak trpA gene was lowered, so that now the trpA gene with just M2 was now DEAD. This would mean that EVOLUTION MADE IT UNEVOLVEABLE

how can we find out if it evolved to become unevolveable
How can we find out if it “evolved to become unevolveable”?

We did “part swapping” experiments! We took the large part (red) from our original plasmid, combined it with trpA-M2; the gene was weakly trpA. When we took the same piece was from a plasmid that had evolved, the trpA-M2 gene was DEAD!

Evolved piece-

trpA-M2 gene DEAD

Original piece-

trpA-M2 gene WEAK

slide28
What did this mean? Most likely, a mutation had occurred, outside the trpA-M2 gene, that had turned the weakly trpA gene OFF.

Mutation somewhere in red, not in the trpA gene! Evolution in red switched off the trpA gene in blue. That somewhere was a single base change at 1584.

1584

a case of evolution preventing evolution
A case of evolution preventing evolution

This path NEVER happens

Selection because of fitness advantage

Mutation

M1, M2

DeadTrpA

M1, M2

Weak TrpA

Change at 1584 ALWAYS happens

M1, M2

Dead TrpA

M1, M2

Strong TrpA

M1, M2

STILL Dead TrpA

Mutation lowers trpA expression, increases fitness

Population of fully Trp+ cells

Reversion of M1 no longer selective; both must now revert for a Trp+ cell

how is evolution like a guy
How is evolution like a guy?

1) It has trouble doing two things at once

2) Even when it only has one thing to do, it sometimes gets sidetracked

acknowledgements
Acknowledgements
  • Merck Foundation
  • Biologic Institute
  • UW-Superior
  • A.C. Matin Lab and Stanford University
  • NUMEROUS undergraduate students!
    • Pravien Abeywickrema,Kayo Sakaguchi
    • Robert Jennings, Ranjuna Weerasekera
    • Lynn Meyers, Sarah Rahn, Stephanie Ebnet, Benjamin Okemwa
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