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ChipSeq Analysis Team Members: Wen-Han Pang, Natalia Shatokina Faculty Advisor: Dr. Russ Abbott, Dr. Sandra Sharp California Institute of Technology Liaison: D epartment of Computer Science College of Engineering, Computer Science, and Technology California State University, Los Angeles.

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  1. ChipSeq AnalysisTeam Members: Wen-Han Pang, Natalia ShatokinaFaculty Advisor: Dr. Russ Abbott, Dr. Sandra SharpCalifornia Institute of Technology Liaison:Department of Computer ScienceCollege of Engineering, Computer Science, and TechnologyCalifornia State University, Los Angeles INSIGHTS STEP BY STEP INTO DNA! Regulator Protein DNA MODEL upstream downstream intersection between any of number of regulator binding site data files, which could scale up to 23,000 records per files Find the spatial relationship between regulator binding site and gene model, which range from WHOLE GENOME Find the gene model over / under certain RNA strength threshold through out the Genome Raw Data .xls, .txt format A RDBMS APPROACH Javascript Dynamic Uploading Create/Delete Tables On The Run RDBMS Schema AJAX Real Time Input Feedback JSP/JDBCReal Time/ Interactive Interface RESULT A CLOUD COMPUTING APPROACH Pig Data Flow Framework Query-Based Map-Reduce Map-Reducee Program Function Programming Hadoop File System Multiple Nodes Cluster Picture Credits: Gordon Kwan, UTMB Cell Biological Graduate Program

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