Numerical simulation of 3d fully nonlinear waters waves on parallel computers
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Numerical Simulation of 3D Fully Nonlinear Waters Waves on Parallel Computers. Xing Cai University of Oslo. Outline of the Talk. Mathematical model Numerical scheme (sequential) Parallelization strategy (domain decomposition) Object-oriented implementation Numerical experiment.

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Numerical Simulation of 3D Fully Nonlinear Waters Waves on Parallel Computers

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Numerical simulation of 3d fully nonlinear waters waves on parallel computers

Numerical Simulation of3D Fully Nonlinear Waters Waveson Parallel Computers

Xing Cai

University of Oslo


Outline of the talk

Outline of the Talk

  • Mathematical model

  • Numerical scheme (sequential)

  • Parallelization strategy (domain decomposition)

  • Object-oriented implementation

  • Numerical experiment

PARA'98


Mathematical model

Mathematical Model

  • Fully nonlinear 3D water waves

  • Primary unknowns:

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Numerical scheme

Numerical Scheme

  • Physical domain:

  • Transformation: (a fixed domain)

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Numerical scheme1

Numerical Scheme

  • Operator splitting

  • At each time level:

    • FDM for updating free surface conditions

    • FEM solution of an elliptic boundary value problem in

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Preconditioning

Preconditioning

  • Elliptic boundary value problem - most CPU intensive

  • Resulting system of linear equations

  • Preconditiong

Computational cost

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N- number of unknowns


The question

The Question

Starting point: an o-o water wave simulator

(built in Diffpack: C++ environment for scientific computing)

How to do the parallelization?

  • Different approaches on different levels:

  • Automatic parallelization

  • Parallelization on the low matrix-vector level

  • Parallelization on the level of simulators

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Parallelization strategy

Parallelization Strategy

  • Domain Decomposition

  • Divide and conquer

  • Solution of the original large problem through iteratively solving many smaller subproblems --solution method or preconditioner

  • Flexible -- localized treatment of irregular geometries, singularities etc

  • Very efficient numerical methods -- even on sequential computers

  • Suitable for coarse grained parallelization

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Overlapping domain decomposition

Overlapping Domain Decomposition

  • Alternating Schwarz method for two subdomains

  • Example: solving an elliptic boundary value problem

  • in

  • A sequence of approximations

  • where

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Numerical foundation

Numerical Foundation

  • Additive Schwarz Method

  • Subproblems are of the same form as the original large problem, with possibly different boundary conditions on artificial boundaries.

  • Subproblems can be solved in parallel.

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Convergence of the solution

Convergence of the Solution

Example:

Solving the Poisson

problem on the unit

square

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Numerical foundation1

Numerical Foundation

  • Coarse Grid Correction

  • Important for good DD convergence

  • Run on each processor, shared with subdomain simulators on the same processor

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Some observations

Some Observations

  • Parallel Computing

  • efficiency relies on the parallelization

  • Domain Decomposition

  • suits well for parallel computing

  • a good parallelization strategy

  • Object-Oriented Programming Technique

  • flexible and efficient sequential simulators

  • can be used in subdomain solves -- main ingredient of DD

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New programming model

New Programming Model

  • A simulator-parallel model

  • Each processor hosts an arbitrary number of subdomains

  • balance between numerical efficiency and load balancing

  • One subdomain is assigned a sequential simulator

  • Flexibility -- different types of grids, linear system solvers, preconditioners, convergence monitors etc. are allowed for different subproblems

  • Domain decomposition on the level of subdomain simulators!

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Simulator parallel

Simulator-Parallel

  • Reuse of existing sequential simulators

  • Data distribution is implied

  • No need for global data

  • Needs additional functionalities for exchanging nodal values inside the overlapping region

  • Needs some global administration

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A generic programming framework

A Generic Programming Framework

  • An add-on library (SPMD model)

  • Use of object-oriented programming technique

  • Flexibility and portability

  • Simplified parallelization process for end-user

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The administrator

The Administrator

  • Parameter Interface

    solution method or preconditioner, max iterations, stopping criterion etc

  • DD algorithm Interface

    access to predifined numerical algorithme.g.CG

  • Operation Interface (standard codes & UDC)

    access to subdomain simulators, matrix-vector product, inner product etc

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The subdomain simulator

The Subdomain Simulator

  • Subdomain Simulator -- a generic representation

  • C++ class hierarchy

  • Interface of generic member functions

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Adaptation of sequential simulator

SubdomainSimulator

SubdomainFEMSolver

NewWSimulator

Adaptation of Sequential Simulator

  • Class SubdomainSimulator - generic representation of a sequential simulator.

  • Class SubdomainFEMSolver - generic representation of a sequential simulator using FEM.

  • A new sequential wave simulator that fits in the framework is

  • readily extended from the

  • existing sequential simulator,

  • also being a subclass of

  • SubdomainFEMSolver.

PARA'98

WaveSimulator


Performance

Performance

  • Algorithmic efficiency

  • efficiency of original sequential simulator(s)

  • efficiency of domain decomposition method

  • Parallel efficiency

  • communication overhead (low)

  • coarse grid correction overhead (normally low)

  • synchronization overhead

  • load balancing

    • subproblem size

    • work on subdomain solves

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Parallel simulation of waves

Parallel Simulation of Waves

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Parallel efficiency

Parallel Efficiency

  • Fixed number of subdomains M=16.

  • Subdomain grids from partition of a global 41x41x41 grid.

  • Simulation over 32 time steps.

  • DD as preconditioner of CG for the Laplace eq.

  • Multigrid V-cycle as subdomain solver.

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Overall efficiency

Overall Efficiency

  • Number of subdomains equal to number of processors

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*ForP=2 parallel BiCGStab is used.


Summary

Summary

  • Efficient solution of elliptic boundary value problems

  • Parallelization based on DD

  • Introduction of a simulator-parallel model

  • A generic framework for implementation

    http:www.nobjects.com

PARA'98


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