'Target string' presentation slideshows

Matthieu Hodgkinson Ph.D. Thesis defence April 2012 Dept. Of computer science NUI Maynooth

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Text manipulation

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Text manipulation

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An Introduction to Perl Part 3

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1. BLAST (Basic Local Alignment Search Tool) Heuristic

1. BLAST (Basic Local Alignment Search Tool) Heuristic. Only parts of protein are frequently subject to mutations. For example, active sites (that one which binds with other proteins) are not while regions between active sites (which help to shape the protein) are.

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D 3 : Passage Retrieval

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String Handling Functions

CHAPTER 4. String Handling Functions. Session Objectives. Define String. Explain String Handling Functions. Concatenation (joining) of two strings. Copy one string into another. Convert Lowercase string into Upper case string And Uppercase into Lowercase. Find the length of the string.

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Strings in Python

Strings in Python. String Methods. String methods. You do not have to include the string library to use these! Since strings are objects, you use the dot notation (like in graphics)

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Haha  SSAHA

-SSAHA stores individual nucleotide base information as 2-bits of information per base: A is stored as 00 C is stored as 01 G is stored as 10 T is stored as 10 -This allows for fast and efficient storage and processing, using less memory and less processor power

157 views • 1 slides