'Protein structure determination' presentation slideshows

Jianlin Cheng, PhD Assistant Professor Computer Science Department & Informatics Institute

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Automating Steps in Protein Structure Determination by NMR

Automating Steps in Protein Structure Determination by NMR. CS 296.4 April 13, 2009. Background Steps in NMR protein structure determination The ACE cycle (Assign-Calculate-Evaluate) The assignment problem

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Automating Steps in Protein Structure Determination by NMR

Automating Steps in Protein Structure Determination by NMR. CS 296.4 April 13, 2009. Background Steps in NMR protein structure determination The ACE cycle (Assign-Calculate-Evaluate) The assignment problem

526 views • 44 slides

Protein Structure Determination by NMR Spectroscopy

Protein Structure Determination by NMR Spectroscopy. 1D Spectrum. amide/ aromatic/ region. alpha region. methyl region. 0.015 M glucagon 360 MHz. 0.01 M Inhibitor K , 360 MHz. 2D J-resolved. COSY 45. COSY 90. COSY DQF. TOCSY. COSY L.R. TOCSY.

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IV. Protein Structure Prediction and Determination Methods of protein structure determination

IV. Protein Structure Prediction and Determination Methods of protein structure determination Critical assessment of structure prediction Homology modelling Threading Prediction of novel folds Protein design. Methods to determine protein structure.

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Bioinformatics Applications and Workloads

Bioinformatics Applications and Workloads. Collaboration with the BMRB. The BioMagResBank is a repository for data from NMR spectroscopy on proteins. Two main efforts: - Weekly BLAST run - Protein Structure Determination. BLAST. Framework in PERL completely automates the process:

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