'Protein domains' presentation slideshows

Exploring Promiscuous Protein Domains and DNA/Protein Motifs through Pedagogy and Practice Part 2

Exploring Promiscuous Protein Domains and DNA/Protein Motifs through Pedagogy and Practice Part 2. Salvador Cordova. Evolutionary Genomics Group at NIH, NCBI Same Institution which fired Evolutionary Biologist Richard Sternberg Resulting in Congressional Investigation.

1.53k views • 152 slides

Domain,tertiary , and quarternary structure of proteins

Domain,tertiary , and quarternary structure of proteins. Levels of protein structure organization. Between secondary and tertiary structure. Supersecondary structure : arrangement of elements of same or different secondary structure into motifs ; a motif is usually not stable by itself.

1.05k views • 79 slides

Biology 224 Dr. Tom Peavy Sept 28 & 30

Protein Structure & Analysis. Biology 224 Dr. Tom Peavy Sept 28 & 30. <Images from Bioinformatics and Functional Genomics by Jonathan Pevsner>. Protein families. Protein localization. protein. Protein function. Gene ontology (GO): --cellular component --biological process

632 views • 48 slides

Predicting Function (& location & post- tln modifications ) from Protein Sequences

Predicting Function (& location & post- tln modifications ) from Protein Sequences. June 24, 2014. Outline. Usefulness of protein domain analysis Types of protein domain databases Interpro scan of multiple domain DB Using the SMART database Predicting post-translational modifications.

649 views • 42 slides

protein

Predicting Protein Function. protein. RNA. DNA. Biochemical function (molecular function). What does it do? Kinase??? Ligase???. Page 245. Function based on ligand binding specificity. What (who) does it bind ??. Page 245. Function based on biological process.

572 views • 42 slides

Functional Annotation of Proteins with Known Structure by Structure and Sequence Similarity,

Functional Annotation of Proteins with Known Structure by Structure and Sequence Similarity, DNA-protein Interaction Patterns and GO Framework. Ilya Shindyalov, UCSD/SDSC. PhD, Group Leader, Protein Science Research. DIMACS 2005-06-13. Essential Dataflow in Protein Science. Protein.

568 views • 40 slides

protein

Predicting Protein Function. protein. RNA. DNA. Biochemical function (molecular function). What does it do? Kinase??? Ligase???. Page 245. Function based on ligand binding specificity. What (who) does it bind ??. Page 245. Function based on biological process.

589 views • 39 slides

Tutorial 9

Tutorial 9. Protein and Function Databases. Protein and Function Databases. UniProt - SwissProt/TrEMBL PROSITE Pfam Gene Onltology DAVID. Glossary. Domain A structural unit which can be found in multiple protein contexts. Glossary. Repeat

536 views • 36 slides

Protein domain BioBricks

475 views • 32 slides

Wellcome Trust Workshop Working with Pathogen Genomes Module 3 Sequence and Protein Analysis

Wellcome Trust Workshop Working with Pathogen Genomes Module 3 Sequence and Protein Analysis (Using web-based tools). Artemis & ACT. PSU Projects. Organism. Database entry. Finished genome. Annotated genome. Gene finders. Primary DNA sequence. Preannotation manual curation.

430 views • 31 slides

Recursive domains in proteins

363 views • 30 slides

Protein evolution The role of domains

309 views • 26 slides

Bioinformatics for biomedicine Protein domains and 3D structure

Bioinformatics for biomedicine Protein domains and 3D structure. Lecture 4, 2006-10-10 Per Kraulis http://biomedicum.ut.ee/~kraulis. What is bioinformatics? Basic databases and tools Sequence searches: BLAST, FASTA Multiple alignments, phylogenetic trees

466 views • 25 slides

Today

Today. Elements of complex genomes Protein domains and exon shuffling Origin of novel genes Alternative splicing Transposable elements and genome size. Protein domains bind antigens in human immunoglobulin. Evolution and conservation of domains in diverse proteins.

392 views • 21 slides

Rob Russell Cell Networks University of Heidelberg

Interactions and Modules: the how and why of molecular interactions. Rob Russell Cell Networks University of Heidelberg. Proteins are modular.

285 views • 18 slides

in a quality perspective

in a quality perspective. Alamut. Gene browser over 18,000+ human protein-coding genes Advanced visualization of gene-related annotations Integration of prediction tools Variant management and reporting HGVS nomenclature compliancy. Alamut. Ref . Genome. Conservation.

294 views • 16 slides

Overview

Overview. Introduction Biological network data Text mining Gene Ontology Expression data basics Expression, text mining, and GO Modules and complexes Domains and conclusion. Domain Interaction networks. Protein domain basics Applications of domain interaction networks

262 views • 14 slides

A New Interface to GeneKeyDB

A New Interface to GeneKeyDB. Methods for analyzing relationships among proteins based on shared motifs Chris Symons & Xinxia Peng. Protein domains are distinct units of protein three-dimensional structure, which also carry function.

224 views • 14 slides

Systematic Identification of Protein Domains for Structure Determination

Systematic Identification of Protein Domains for Structure Determination. Ming Luo, Ph.D. University of Alabama at Birmingham March 29, 2004 NIH. Current Progress on C. elegans Proteins. * Unique ORFs, each expressed and purified multiple times. Markley. Domain Identification. Methods

207 views • 12 slides

BME 110L / BIOL 181L Computational Biology Tools

162 views • 3 slides