'Phylogenetic profiles' presentation slideshows

The STRING database

The STRING database. Michael Kuhn EMBL Heidelberg. protein interactions. example. Tryptophan synthase beta chain E. Coli K12. many sources. genomic context. curated knowledge. experimental evidence. T. literature. 373 genomes. (only completely sequenced genomes). 1.5 million genes.

2.26k views • 103 slides

STRING Modeling of biological systems through cross-species data integration

STRING Modeling of biological systems through cross-species data integration. Lars Juhl Jensen. promoter analysis. Jensen et al., Bioinformatics, 2000. genome visualization. Pedersen et al., Journal of Molecular Biology, 2000. protein function prediction. STRING. integrate diverse evidence.

1.14k views • 100 slides

STRING Modeling of biological systems through cross-species data integration

STRING Modeling of biological systems through cross-species data integration. Lars Juhl Jensen. promoter analysis. Jensen et al., Bioinformatics, 2000. genome visualization. Pedersen et al., Journal of Molecular Biology, 2000. protein function prediction. STRING. integrate diverse evidence.

1.01k views • 100 slides

Sequence Analysis and Function Prediction

Sequence Analysis and Function Prediction. Limsoon Wong. Very Brief Intro to Sequence Comparison/Alignment. Motivations for Sequence Comparison. DNA is blue print for living organisms Evolution is related to changes in DNA

584 views • 40 slides

Exploiting Structural and Comparative Genomics to Reveal Protein Functions

Exploiting Structural and Comparative Genomics to Reveal Protein Functions. How many domain families can we find in the genomes and can we predict the functions of relatives? Exploiting protein structure to predict protein functions

508 views • 37 slides

Social behavior of proteins?

Social behavior of proteins?. Rui Alves. Organization of the talk. Social behavior of the protein?!?!?!? Using meta text analysis Using phylogenetic profiling Using pathway homology Using protein docking Using microarray data Using protein interaction data. Proteins do not work alone!.

534 views • 37 slides

Exploiting Structural and Comparative Genomics to Reveal Protein Functions

Exploiting Structural and Comparative Genomics to Reveal Protein Functions. How many domain families can we find in the genomes and can we predict the functions of relatives? Exploiting protein structure to predict protein functions

376 views • 37 slides

Presented by Krishna Balasubramanian

Use of Logic Relationships to Decipher Protein Network Organization Peter M. Bowers, Shawn J. Cokus, David Eisenberg, Todd O. Yeates. Presented by Krishna Balasubramanian. Contents. Introduction Background Method Used - LAPP Results Observations Conclusion Future Work. Introduction.

375 views • 25 slides

Using phylogenetic profiles to predict protein function and localization

Using phylogenetic profiles to predict protein function and localization. As discussed by Catherine Grasso. Papers. Pellegrini, et al. Assigning protein functions by comparative genome analysis: Protein phylogenetic profiles. (1999) PNAS 96, 4285-4288.

343 views • 19 slides

Modelling, comparison, and analysis of proteomes Ram Samudrala University of Washington

279 views • 15 slides