'Overlap graph' presentation slideshows

Paul Medvedev Michael Brudno

Maximum Likelihood Genome Assembly. Paul Medvedev Michael Brudno. Bioinformatics Algorithms. Presented by Md. Tanvir Al Amin, Md. Shaifur Rahman Khalid Mahmood. Department of Computer Science and Engineering. BUET. *Some of the slides are taken from other sources.

1.09k views • 93 slides

Announcements

Announcements. Lab tomorrow morning at 9:30 For Tuesday: read wooly mammoth genome paper and bring a printed version of three questions/topics for discussion Discussion leader selection. Sequencing and Assembly. The Relic, 1997. GEN875, Genomics and Proteomics, Fall 2007. Questions.

710 views • 59 slides

De novo bacterial genome sequencing: millions of very short reads assembled on a desktop computer

748 views • 48 slides

De novo bacterial genome sequencing: millions of very short reads assembled on a desktop computer

486 views • 48 slides

Assembly Group Presentation II

Assembly Group Presentation II. Robert Arthur Kevin Lee Xing Liu Pushkar Pande Gena Tang Racchit Thapliyal Tianjun Ye. Presentation Overview. Sequencing Methods Experimental comparison of De Bruijn graph and Overlay graph assemblers Preliminary Results Lab Exercise. Sequencing Methods.

518 views • 43 slides

Spectral Partitioning: One way to slice a problem in half

Spectral Partitioning: One way to slice a problem in half. C B. A. 8. 2. 5. 3. 5. 3. 1. 4. 6. 4. 2. 7. 6. 1. 2. ?. G. Laplacian of a Graph. v 1. 0. 2. -1. -1. v 2. 0. -1. 3. -1. -1. 1. v 3. -1. -1. 3. -1. =. v 4. -1. -1. 3. -1. -1. -1. -1. 3.

308 views • 23 slides

Sequencing and Assembly

335 views • 18 slides

De Novo S hort R ead A ssembly

De Novo S hort R ead A ssembly. Li, Zhe 2011-06-20. Shotgun sequencing and assembly. Original DNA is broken into a collection of segments. The ends of each sequence are sequenced. The sequence reads are assembled together based on sequence similarity.

292 views • 18 slides

Some classes of graphs

242 views • 8 slides