'Organismal tree' presentation slideshows

Organismal tree - PowerPoint PPT Presentation

Phylip

Phylip

written and distributed by Joe Felsenstein and collaborators (some of the following is copied from the PHYLIP homepage). Phylip. PHYLIP (the PHYL ogeny I nference P ackage) is a package of programs for inferring phylogenies (evolutionary trees).

★ ★ ★ ★ ★

429 views • 41 slides
Phylogenetic reconstruction - How

Phylogenetic reconstruction - How

Distance analyses calculate pairwise distances (different distance measures, correction for multiple hits, correction for codon bias) make distance matrix (table of pairwise corrected distances) calculate tree from distance matrix i) using optimality criterion

★ ★ ★ ★ ★

408 views • 29 slides
MCB 5472

MCB 5472

MCB 5472. Intro to Trees. Peter Gogarten Office: BSP 404 phone: 860 486-4061, Email: gogarten@uconn.edu. Distance analyses calculate pairwise distances (different distance measures, correction for multiple hits, correction for codon bias)

★ ★ ★ ★ ★

283 views • 28 slides
MCB 371/372

MCB 371/372

MCB 371/372. PHYLIP how to make sense out of a tree 4/11/05. Peter Gogarten Office: BSP 404 phone: 860 486-4061, Email: gogarten@uconn.edu. Progress in Unix.

★ ★ ★ ★ ★

360 views • 24 slides
Sequence alignment:

Sequence alignment:

Sequence alignment:. CLUSTALW. MUSCLE. Removing ambiguous positions:. T-COFFEE. FORBACK. Generation of pseudosamples:. SEQBOOT. PROTDIST. TREE-PUZZLE. Calculating and evaluating phylogenies:. PROTPARS. PHYML. NEIGHBOR. FITCH. SH-TEST in TREE-PUZZLE. CONSENSE.

★ ★ ★ ★ ★

362 views • 23 slides
Bootstrap ?

Bootstrap ?

Bootstrap ?. See here. Maximum Likelihood and Model Choice. The maximum Likelihood Ratio Test (LRT) allows to compare two nested models given a dataset.

★ ★ ★ ★ ★

374 views • 19 slides

View Organismal tree PowerPoint (PPT) presentations online in SlideServe. SlideServe has a very huge collection of Organismal tree PowerPoint presentations. You can view or download Organismal tree presentations for your school assignment or business presentation. Browse for the presentations on every topic that you want.