'Metabolic network' presentation slideshows

V18 EcoCyc Analysis of E.coli Metabolism

V18 EcoCyc Analysis of E.coli Metabolism. E.coli genome contains 4391 predicted genes, of which 4288 code for proteins. 676 of these genes form 607 enzymes of E.coli small-molecule metabolism. Of those enzymes, 311 are protein complexes, 296 are monomers. Organization of protein complexes.

1.54k views • 136 slides

Lecture 4

Lecture 4. Reaction system as ordinary differential equations Reaction system as stochastic process Metabolic network and stoichiometric matrix Graph spectral analysis/Graph spectral clustering and its application to metabolic networks

1.14k views • 99 slides

Structure, Function and Evolution of Metabolic Networks (I)

Structure, Function and Evolution of Metabolic Networks (I). Jing Zhao College of Pharmacy, Second Military Medical University Shanghai Center for Bioinformation and Technology 2009.5.25. Spring school on multiscale methods and modeling in biophysics and system biology, Shanghai, China.

773 views • 69 slides

The Identification of Scale-Free Gene-Protein Networks

The Identification of Scale-Free Gene-Protein Networks. Ronald Westra Department of Mathematics Maastricht University. Items in this Presentation. 1. Biological background and problem formulation 2. Modeling of dynamic gene/proteins interactions 3. Scale-free network structures

763 views • 66 slides

Class 2: Graph theory and basic terminology Learning the language

857 views • 60 slides

Course Evaluation Form

598 views • 46 slides

Complex (Biological) Networks

Complex (Biological) Networks. Analyzing Metabolic Networks. Elhanan Borenstein Spring 2010. Some slides are based on slides from courses given by Roded Sharan and Tomer Shlomi. Metabolism.

553 views • 40 slides

Computational Exploration of Metabolic Networks with Pathway Tools Part 2: APIs & Examples

Computational Exploration of Metabolic Networks with Pathway Tools Part 2: APIs & Examples. Randy Gobbel, Ph.D. Bioinformatics Research Group SRI International gobbel@ai.sri.com http://BioCyc.org/. Computing with Pathway Tools: APIs. Generic functions with a consistent naming scheme

528 views • 36 slides

Metabolic peculiarities of Aspergillus niger disclosed by comparative metabolic genomics

Metabolic peculiarities of Aspergillus niger disclosed by comparative metabolic genomics. Authors : Jibin Sun 1 , Xin Lu 1 , Ursula Rinas 1 and An Ping Zeng 1,2

499 views • 35 slides

Nathan Price Department of Chemical & Biomolecular Engineering

Integrated Regulatory-Metabolic N etwork Construction using Probabilistic Regulation of Metabolism (PROM). Nathan Price Department of Chemical & Biomolecular Engineering Center for Biophysics & Computational Biology Institute for Genomic Biology University of Illinois, Urbana-Champaign

456 views • 28 slides

Global topological properties of biological networks

Global topological properties of biological networks. Protein-Protein Interaction Network. Saccharomyces cerevisiae. Node: protein Edge: protein-protein interaction. E. coli metabolic network. Basic features of a network. Degree distribution Clustering coefficients

446 views • 28 slides

Multiple Kernel Learning

404 views • 24 slides

Metabolic Flux Analysis

Metabolic Flux Analysis. Metabolic Flux Analysis of Citric Acid Fermentation by Candida lipolytica Presentation by: Miles Beamguard and Wade Mack September 19, 2001. Case Study.

991 views • 24 slides

Systems Biology for TB

Systems Biology for TB. Gary Schoolnik James Galagan. Systems Approach to TB. Combine genomic technology with computational methods to model TB metabolic and regulatory networks. Metabolic Network Model. Regulatory Network Model. An International Collaboration.

333 views • 24 slides

Multidimensional Optimality of Microbial Metabolism

336 views • 22 slides

Systems biology and biotechnology

516 views • 22 slides

Reconstruction and analysis of human liver-specific metabolic network based on CNHLPP data

Reconstruction and analysis of human liver-specific metabolic network based on CNHLPP data. Jing Zhao Logistical Engineering University. The 6th Chinese Conference of Complex Networks ? October 15-18, 2010. Suzhou, China. OutLine Background Reconstruction of metabolic networks

346 views • 21 slides

Network topology

Graph-based analysis of biochemical networks. Network topology. Connectivity - definition. In a non-directed graph The degree ( k) of a node is the number of edges for which it is an endpoint. In a directed graph

458 views • 20 slides

Purpose of the Experiment

Purpose of the Experiment. Fluxes in central carbon metabolism of a genetically engineered, riboflavin-producing Bacillus subtilis strain were investigated in glucose-limited chemostat cultures at low (0.11 h -1 ) and high (0.44 h -1 ) dilution rates. Introduction.

346 views • 18 slides

309 views • 14 slides