'Genome browser' presentation slideshows

Chimp and us

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Tutorial 12

Tutorial 12. Genome browser. Genome browser. Free, open source, online browser for genomes. Contains ~100 genomes, from nematodes to human. Many tools that can be used to analyze genomic data. Genome browser. http://genome.ucsc.edu/. How to find a gene of interest?. genome.

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Annotation of Anopheline Genomes at VectorBase

Annotation of Anopheline Genomes at VectorBase. Dan Lawson, VectorBase & The Anopheles Genomes Cluster Consortium EMBL-EBI. Anopheline species in this study: Current status. Genome sequencing 9 of 16 species assembled and annotated RNAseq 10 of 12 species sequenced Isolate re-sequencing

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UCSC Genome Browser

UCSC Genome Browser. The Progress. Database and Tool Explosion. 2000 : 230 databases and tools. 1996 : first annual compilation of databases and tools lists 57 databases and tools. 2009: 1170 databases and tools. The annual database issue of Nucleic Acids Research has grown

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UCSC Genome Browser

UCSC Genome Browser. Introduction to ab initio and evidence-based gene finding. Wilson Leung 06/2006. Outline. Introduction to annotation ab initio gene finding Basics of the UCSC Browser Evidence-based gene finding using the UCSC Browser.

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Welcome to the Gramene Genome Browser Tutorial

The Genome Browser allows you to Browse the Rice-Japonica, Maize and Arabidopsis genomes. View the location of a particular feature on the rice genome and examine neighboring features. View the gene model of a candidate gene.

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Genome Browsing

Genome Browsing. with the Ensembl Genome Browser. http://www.ensembl.org/. Genome Browsers. UCSC. NCBI. Ensembl. http://genome.ucsc.edu/. http://www.ensembl.org/. Ensembl Genome Browser. Human Genome. MapView. ContigView - Overview. CytoView. ContigView - Detailed view. GeneView.

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Computational Genomics BIOL 8803 A Spring 2011 King Jordan & Andy Conley

Computational Genomics BIOL 8803 A Spring 2011 King Jordan & Andy Conley Office hours by appointment: king.jordan@biology.gatech.edu 404-385-2224 Cherry Emerson 215 aconley@gatech.edu 404-385-1264 Cherry Emerson 217. Genomics & Computation.

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Lesson 5 Genetic Variant Annotation

CBI Tech. Workshop - NGS Special Session. Lesson 5 Genetic Variant Annotation. Linlin Yan ( ??? ) Center for Bioinformatics, Peking University Jun 13, 2011. Outline. Review & Overview Thoughts & Methods Variant Browsing Variant Annotation Association Study More Beyond Demos & Exercises.

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Computational Genomics BIOL 7210 A Spring 2013 King Jordan & Andy Conley

Computational Genomics BIOL 7210 A Spring 2013 King Jordan & Andy Conley Office hours by appointment: king.jordan@biology.gatech.edu 404-385-2224 Cherry Emerson 215 aconley@gatech.edu 404-385-1264 Cherry Emerson 217. Genomics & Computation.

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Exploring Rice Phenotypes Using Gramene

A Comparative Mapping Resource. GRAMENE. Exploring Rice Phenotypes Using Gramene. What is Gramene?. Comparative mapping resource for cereals Rice genome browser Genetic and physical maps for rice and other cereals Rice mutant phenotypes, QTL and proteins Literature Ontology.

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Maize Genome Project

Maize Genome Project. Shiran Pasternak January 13, 2006 Gramene SAB Meeting San Diego, CA. Maize Genome Project. 3 year sequencing effort Funded November, 2005 Objectives Sequence the maize genespace Genic and regulatory regions Finish 721 contigs: 1 in 100,000 error rate

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MaizeGDB: A Very Short Overview of a Database Resource for Biological Information on Zea mays

MaizeGDB: A Very Short Overview of a Database Resource for Biological Information on Zea mays. Jack M. Gardiner jack.m.gardiner@gmail.com ASPB 2010. MaizeGDB 101. MaizeGDB strives to: Serve as a central repository for public maize information

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PhenCode

PhenCode. Linking Human Mutations to Phenotype. PhenCode. Brings the deep information on genotypes and phenotypes in locus specific databases (LSDBs) into a common database Uses genome sequence coordinates

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Go to the genome browser...

Downloading a multiple alignment for your region of interest from the UCSC Genome Browser ( http :// genome.ucsc.edu/ ) that can be uploaded in ConTra for analysis. Go to the genome browser. Select clade and genome. Search for ATOH7.

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VectorBase A home for invertebrate vectors of human pathogens vectorbase

VectorBase A home for invertebrate vectors of human pathogens http://www.vectorbase.org. info@vectorbase.org. Scope A resource center for invertebrate vectors of human pathogens , with an emphasis on community -driven data.

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Detecting enriched regions (Chip- seq , RIP- seq ) Statistical evaluation of enriched regions

Bioinformatics Unit. OVERVIEW

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A new way of seeing genomes Combining sequence- and signal-based genome analyses

FLI. AA. 35.8. AC. 35.8. AG. 30.5. AT. 33.4. CA. 36.9. CC. 33.4. CG. 31.1. CT. 30.5. GA. 39.3. GC. 38.3. GG. 33.4. GT. 35.8. TA. 40. TC. 39.3. TG. 36.9. TT. 35.8. A new way of seeing genomes Combining sequence- and signal-based genome analyses.

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Diversity Data at MaizeGDB

Diversity Data at MaizeGDB. Ethalinda KS Cannon 1 , Carson M. Andorf 2 , Bremen L. Braun 2 , Darwin A. Campbell 2 , Mary L. Schaeffer 3,4 , Cheng-Ting Yeh 5 , Patrick S. Schnable 5 , Carolyn J Lawrence 1,2

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