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Geba genomes - PowerPoint PPT Presentation

GEBA Project Summary

GEBA Project Summary. Dongying Wu. Phylogenetic Tree Building (Martin Wu). Concatenate alignments of 31 marker genes build a PHYML tree 667 non-GEBA genomes, 53 genomes. Phylogenetic Distance (PD). B. b. C. c. d. a. A. PD=sum of all the branch lengths PD{A,B,C}=a+b+c+d.

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516 views • 40 slides

What is Annotation?

What is Annotation?. Microbial Genome Annotation Network Training Workshop (supported by NSF RCN-UBE grant). Some Basic Definitions. We all feel comfortable with genes and genomes, but what is annotation?

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378 views • 16 slides

DY Wu et al. Nature 462 , 1056-1060 (2009) doi:10.1038/nature08 656

Maximum-likelihood phylogenetic tree of the bacterial domain based on a concatenated alignment of 31 broadly conserved protein-coding genes 16 . Phyla are distinguished by colour of the branch and GEBA genomes are indicated in red in the outer circle of species names.

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195 views • 1 slides

DY Wu et al. Nature 462 , 1056-1060 (2009) doi:10.1038/nature08 656

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126 views • 1 slides

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Geba genomes - PowerPoint PPT Presentation

GEBA Project Summary

What is Annotation?

DY Wu et al. Nature 462 , 1056-1060 (2009) doi:10.1038/nature08 656

DY Wu et al. Nature 462 , 1056-1060 (2009) doi:10.1038/nature08 656