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Divide & Conquer Algorithms

Divide & Conquer Algorithms

Divide & Conquer Algorithms. Outline. MergeSort Finding the middle point in the alignment matrix in linear space Linear space sequence alignment Block Alignment Four-Russians speedup Constructing LCS in sub-quadratic time. Divide and Conquer Algorithms. Divide problem into sub-problems

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872 views • 68 slides
Divide & Conquer Algorithms

Divide & Conquer Algorithms

Divide & Conquer Algorithms. Outline. MergeSort Finding the middle point in the alignment matrix in linear space Linear space sequence alignment Block Alignment Four-Russians speedup Constructing LCS in sub-quadratic time. Divide and Conquer Algorithms. Divide problem into sub-problems

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303 views • 30 slides
Sequence comparison: Score matrices

Sequence comparison: Score matrices

Sequence comparison: Score matrices. http://faculty.washington.edu/jht/GS559_2012/. Genome 559: Introduction to Statistical and Computational Genomics Prof. James H. Thomas. FYI - informal inductive proof of best alignment path.

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305 views • 20 slides
Sequence comparison: Score matrices

Sequence comparison: Score matrices

Sequence comparison: Score matrices. Genome 559: Introduction to Statistical and Computational Genomics Prof. James H. Thomas. FYI - informal inductive proof of best alignment path.

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348 views • 20 slides
Protein Structure Alignment by Incremental Combinatorial Extension (CE) of the Optimal Path

Protein Structure Alignment by Incremental Combinatorial Extension (CE) of the Optimal Path

Protein Structure Alignment by Incremental Combinatorial Extension (CE) of the Optimal Path. Ilya N. Shindyalov, Philip E. Bourne. Why Align Structures?. Additional measure of protein similarity Structure generally preserved better than sequence over the course of evolution

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268 views • 13 slides

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