'Alignment methods' presentation slideshows

MSA- multiple sequence alignment

MSA- multiple sequence alignment. Aligning many sequences is often preferable to pairwise comparisons. Problem- Computational complexity of multiple alignments grows rapidly with the number of sequences being aligned. .

1.33k views • 98 slides

SEPP and TIPP for metagenomic analysis

SEPP and TIPP for metagenomic analysis. Tandy Warnow Department of Computer Science University of Texas. Phylogeny (evolutionary tree). Orangutan. Human. Gorilla. Chimpanzee. From the Tree of the Life Website, University of Arizona. How did life evolve on earth?.

734 views • 60 slides

Estimating Ultra-large Phylogenies and Alignments

Estimating Ultra-large Phylogenies and Alignments. Tandy Warnow Department of Computer Science The University of Texas at Austin. How did life evolve on earth?. Courtesy of the Tree of Life project. NP-hard optimization problems Stochastic models of evolution Statistical methods

712 views • 60 slides

Ultra-large phylogeny estimation

Ultra-large phylogeny estimation. Tandy Warnow University of Texas at Austin. Phylogeny (evolutionary tree). Orangutan. Human. Gorilla. Chimpanzee. From the Tree of the Life Website, University of Arizona. How did life evolve on earth?. NP-hard optimization problems Graph-theory

586 views • 42 slides

Simultaneous alignment and tree reconstruction

Simultaneous alignment and tree reconstruction. Collaborative grant: Texas, Nebraska, Georgia, Kansas Penn State University, Huston-Tillotson, NJIT, and the Smithsonian Institution. Species phylogeny. From the Tree of the Life Website, University of Arizona. Orangutan. Human. Gorilla.

417 views • 34 slides

Multiple sequence alignment

Multiple sequence alignment. Lesson 4. VTIS C TGSSSNIGAG-NHVK W YQQLPG VTIS C TGTSSNIGS--ITVN W YQQLPG LRLS C SSSGFIFSS--YAMY W VRQAPG LSLT C TVSGTSFDD--YYST W VRQPPG PEVT C VVVDVSHEDPQVKFN W YVDG-- ATLV C LISDFYPGA--VTVA W KADS-- AALG C LVKDYFPEP--VTVS W NSG---

395 views • 31 slides

Alignment methods and database searching

Alignment methods and database searching. June 19, 2003 Learning objectives- Database searching algorithms. Understand how the Needleman-Wunsch method of optimal sequence alignment works. Understand how Smith-Waterman local alignment program works. Assignment of intern sites.

465 views • 30 slides

Dial Indicator ? ??? Shaft Alignment ? ??? ??

Dial Indicator ? ??? Shaft Alignment ? ??? ??. Introductions. What exactly is shaft alignment? Rotating axes must be colinear during operation. Introductions. Type of misalignment Parallel Misalignment Vertical & Horizontal offset Angular Misalignment Vertical & Horizontal Angularity

661 views • 25 slides

Multiple Sequence Alignment

Multiple Sequence Alignment. Multiple Sequence Alignment. VTISCTGSSSNIGAG ? NHVKWYQQLPG VTISCTGTSSNIGS ?? ITVNWYQQLPG LRLSCSSSGFIFSS ?? YAMYWVRQAPG LSLTCTVSGTSFDD ?? YYSTWVRQPPG PEVTCVVVDVSHEDPQVKFNWYVDG ?? ATLVCLISDFYPGA ?? VTVAWKADS ?? ATLVCLISDFYPGA ?? VTVAWKADS ??

468 views • 23 slides

Genome analysis

Genome analysis. Lecture 11: literature discussion. Papers. Consensus sequences improve PSI-BLAST through mimicking profile-profile alignments Dariusz Przybylski and Burkhard Rost Nucleic Acids Research 2007

613 views • 18 slides

Genome Alignment

301 views • 16 slides

CI Training ( Conditioning with Imagery)

CI Training ( Conditioning with Imagery). By: Melissa Accardo & Cassandra Carpino. History and Development .

211 views • 9 slides