'Aligned sequences' presentation slideshows

Introduction to Phylogenetic Estimation Algorithms

630 views • 51 slides

Algorithmics of -1 frameshift RNA sequences

609 views • 48 slides

Complexity and The Tree of Life

Complexity and The Tree of Life. Tandy Warnow The University of Texas at Austin. How did life evolve on earth?. An international effort to understand how life evolved on earth Biomedical applications: drug design, protein structure and function prediction, biodiversity.

545 views • 40 slides

Progressive multiple sequence alignments from triplets

by Matthias Kruspe and Peter F Stadler Presented by Syed Nabeel. Progressive multiple sequence alignments from triplets. Outline. Background Motivation Algorithm Complexity Analysis Experiments and Results Discussions and Future work. Background. Sequence alignment

476 views • 38 slides

Progressive multiple sequence alignments from triplets

by Matthias Kruspe and Peter F Stadler Presented by Syed Nabeel. Progressive multiple sequence alignments from triplets. Outline. Background Motivation Algorithm Complexity Analysis Experiments and Results Discussions and Future work. Background. Sequence alignment

383 views • 38 slides

Whole Genome Assembly

514 views • 32 slides

MCB 5472

MCB 5472. Sequence alignment. Peter Gogarten Office: BSP 404 phone: 860 486-4061, Email: gogarten@uconn.edu. OLD ASSIGNMENTS. Write a script that reads in a sequence and prints out the reverse complement.

415 views • 31 slides

Computational Genomics Lecture #3a (revised 24/3/09)

Intro to ML and Scoring functions PAM and BLOSUM AA scoring matrices. Computational Genomics Lecture #3a (revised 24/3/09). Background Readings : Section 2.7, 2.8 in Biological Sequence Analysis , Durbin et al., 2001.

272 views • 27 slides

Alignment and Algorithms

Alignment and Algorithms. Scoring Matrices: models of evolution Dynamic Program: speed Pairwise Sequence Alignment, variants Significance Pattern recognition, Hidden Markov Models (HMM) Multiple Sequence Alignment (MSA) Protein families Structure features. Scoring Models and Evolution.

442 views • 25 slides

MCB 372

MCB 372. Sequence alignment. Peter Gogarten Office: BSP 404 phone: 860 486-4061, Email: gogarten@uconn.edu. As similar result can be obtained using blastx against a protein databank. dotlet.

376 views • 24 slides

MCB 372

MCB 372. Sequence alignment. Peter Gogarten Office: BSP 404 phone: 860 486-4061, Email: gogarten@uconn.edu. As similar result can be obtained using blastx against a protein databank. dotlet.

391 views • 24 slides

BNFO 240

BNFO 240. Usman Roshan. Last time. Traceback for alignment How to select the gap penalties? Benchmark alignments Structural superimposition BAliBASE. Database searching. Suppose we have a set of 1,000,000 sequences

410 views • 21 slides

Assessment of sequence alignment

Assessment of sequence alignment. Lecture 10. Introduction. The Dot plot Matrix visualisation matching tool: Basics of Dot plot Examples of Dot plot matching sequences Tandems repeats self matching Inverted repeats: genetic palindromes . Sequence alignment Analysis.

422 views • 19 slides

BNFO 602 Multiple sequence alignment

BNFO 602 Multiple sequence alignment. Usman Roshan. Optimal pairwise alignment.

233 views • 14 slides

BNFO 601 Multiple sequence alignment

BNFO 601 Multiple sequence alignment. Usman Roshan. Optimal pairwise alignment.

146 views • 14 slides