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H9 China PowerPoint PPT Presentation


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76. ▲ Duck/Vietnam/OIE-3060/2011 (H6N2). 81. ▲ Duck/Vietnam/OIE-3247/2011 (H6N2). PB2. ▲ Duck/Vietnam/OIE-3141/2011 (H6N2). ▲ Duck/Vietnam/OIE-3021/2011 (H6N2). ▲ Duck/Vietnam/OIE-3406/2012 (H3N8). ▲ Duck/Vietnam/OIE-3426/2012 (H3N8). ● Duck/Vietnam/OIE-2530/2011 (H4N2).

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H9 China

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H9 china

76

  • ▲ Duck/Vietnam/OIE-3060/2011 (H6N2)

81

  • ▲ Duck/Vietnam/OIE-3247/2011 (H6N2)

PB2

  • ▲ Duck/Vietnam/OIE-3141/2011 (H6N2)

  • ▲ Duck/Vietnam/OIE-3021/2011 (H6N2)

  • ▲ Duck/Vietnam/OIE-3406/2012 (H3N8)

  • ▲ Duck/Vietnam/OIE-3426/2012 (H3N8)

  • ● Duck/Vietnam/OIE-2530/2011 (H4N2)

  • ▲ Duck/Vietnam/OIE-3469/2012 (H4N6)

  • ▲ Duck/Vietnam/OIE-3241/2012 (H3N8)

  • ▲ Duck/Vietnam/OIE-527/2011 (H6N2)

98

  • ▲ Duck/Vietnam/OIE-547/2011 (H6N2)

  • ▲ Duck/Vietnam/OIE-0178/2012(H7N1)

  • ▲ Duck/Vietnam/OIE-3231/2011 (H6N2)

74

84

  • ▲ Duck/Vietnam/OIE-3301/2011 (H6N9)

  • ● Duck/Vietnam/OIE-1287/2012(H5N1)

JX8264-like

99

  • ● Duck/Vietnam/OIE-2202/2012 (H5N1)

Mallard/Jiangxi/8264/2004 (H6N2)

  • ● Duck/Vietnam/OIE-2747/2012 (H3N8)

  • ● Duck/Vietnam/OIE-1218/2012(H3N6)

94

  • ● Duck/Vietnam/OIE-1212/2012(H3N2)

Duck/Hunan/491/2005 (H6N2)

  • ▲ Duck/Vietnam/OIE-3321/2011 (H6N2)

  • ● Duck/Vietnam/OIE-2577/2011 (H3N8)

59

Vietnam/1203/2004 (H5N1)

  • ▲ Muscovy duck/Vietnam/OIE-559/2011 (H5N1)

  • ▲ Duck/Vietnam/OIE-3354/2011(H5N1)

71

  • ▲ Duck/Vietnam/OIE-3038/2012 (H5N1)

69

  • ▲ Muscovy duck/Vietnam/OIE-0043/2012(H5N1)

  • ▲ Muscovy duck/Vietnam/OIE-3312/2011(H5N1)

75

  • ▲ Duck/Vietnam/OIE-3002/2011(H5N1)

  • ▲ Muscovy duck/Vietnam/OIE-3012/2011(H5N1)

98

  • ▲ Muscovy duck/Vietnam/OIE-3314/2011(H5N1)

Chicken/Beijing/1/1994(H9N2)

Duck/Hong Kong/Y280/1997(H9N2)

99

Duck/Hong Kong/Y439/1997(H9N2)

H9 China

  • ▲ Chicken/Vietnam/OIE-0056/2012(H9N2)

  • ▲ Duck/Vietnam/OIE-404/2011 (H6N2)

79

98

  • ▲ Duck/Vietnam/OIE-406/2011 (H6N2)

  • ▲ Duck/Vietnam/OIE-4429/2010 (H6N2)

  • ▲ Duck/Vietnam/OIE-4217/2010 (H6N2)

Vietnam I

  • ▲ Duck/Vietnam/OIE-3225/2011 (H6N2)

99

98

  • ▲ Duck/Vietnam/OIE-0033/2012(H6N2)

  • ▲ Duck/Vietnam/OIE-0483/2012(H10N7)

  • ▲ Duck/Vietnam/OIE-0068/2012(H11N3)

64

68

  • ▲ Duck/Vietnam/OIE-0155/2012(H4N6)

Goose/Guangdong/1/1996(H5N1)

Wild bird

  • ▲ Duck/Vietnam/OIE-3022/2011 (H3N8)

90

  • ▲ Duck/Vietnam/OIE-3071/2011 (H4N6)

  • ● Chicken/Vietnam/OIE-1611/2012(H9N2)

99

  • ● Chicken/Vietnam/OIE-2468/2012 (H9N2)

90

  • ● Chicken/Vietnam/OIE-2215/2012 (H5N2)

H6 Group III

  • ● Duck/Vietnam/OIE-2749/2012 (H9N8)

Duck/Eastern China/51/2002 (H6N2)

Duck/Hunan/573/2002 (H6N2)

81

  • ▲ Duck/Vietnam/OIE-535/2011 (H6N2)

  • ● Duck/Vietnam/OIE-2533/2011 (H5N1)

69

  • ● Duck/Vietnam/OIE-1213/2012(H6N6)

91

  • ▲ Duck/Vietnam/OIE-3304/2011 (H6N2)

H6 Group Ⅰ

  • ● Duck/Vietnam/OIE-2562/2011(H6N6)

96

Duck/Hunan/908/2005 (H6N2)

Duck/Shantou/339/2000 (H6N2)

61

Wild Duck/Shantou/2853/2003 (H6N2)

Quail/Hong Kong/G1/1997(H9N2)

99

Teal/Hong Kong/W312/1997 (H6N1)

  • ▲ Duck/Vietnam/OIE-3223/2011 (H4N6)

  • ▲ Duck/Vietnam/OIE-707/2011 (H11N5)

92

  • ▲ Duck/Vietnam/OIE-3061/2012 (H6N2)

  • ▲ Duck/Vietnam/OIE-3349/2011 (H6N2)

Vietnam II

  • ▲ Duck/Vietnam/OIE-4439/2010 (H6N6)

  • ▲ Duck/Vietnam/OIE-745/2011 (H11N9)

  • ▲ Duck/Vietnam/OIE-3287/2011 (H3N6)

89

  • ▲ Duck/Vietnam/OIE-3342/2011 (H6N2)

83

81

  • ▲ Duck/Vietnam/OIE-3479/2012 (H6N2)

0.02

●NorthVietnam ▲South Vietnam

(Nam Dihn) (Bac Lieu, Ca Mau, and Dong Thap)

Supplement Fig. 1 Okamatsuet al.


H9 china

88

  • ▲ Duck/Vietnam/OIE-527/2011 (H6N2)

73

  • ▲ Duck/Vietnam/OIE-547/2011 (H6N2)

  • ▲ Duck/Vietnam/OIE-0033/2012(H6N2)

PB1

  • ▲ Duck/Vietnam/OIE-3231/2011 (H6N2)

  • ▲ Duck/Vietnam/OIE-404/2011 (H6N2)

  • ▲ Duck/Vietnam/OIE-535/2011 (H6N2)

  • ▲ Duck/Vietnam/OIE-3141/2011 (H6N2)

  • ▲ Duck/Vietnam/OIE-3241/2012 (H3N8)

  • ▲ Duck/Vietnam/OIE-3469/2012 (H4N6)

  • ▲ Duck/Vietnam/OIE-0068/2012(H11N3)

  • ▲ Duck/Vietnam/OIE-745/2011 (H11N9)

  • ▲ Duck/Vietnam/OIE-0483/2012(H10N7)

  • ▲ Duck/Vietnam/OIE-3225/2011 (H6N2)

  • ▲ Duck/Vietnam/OIE-0178/2012(H7N1)

Vietnam

  • ▲ Duck/Vietnam/OIE-406/2011 (H6N2)

  • ▲ Duck/Vietnam/OIE-707/2011 (H11N5)

  • ▲ Duck/Vietnam/OIE-4429/2010 (H6N2)

  • ▲ Duck/Vietnam/OIE-4439/2010 (H6N6)

  • ▲ Duck/Vietnam/OIE-3406/2012 (H3N8)

  • ▲ Duck/Vietnam/OIE-3223/2011 (H4N6)

76

  • ▲ Duck/Vietnam/OIE-3061/2012 (H6N2)

64

  • ▲ Duck/Vietnam/OIE-3287/2011 (H3N6)

  • ▲ Duck/Vietnam/OIE-0155/2012(H4N6)

76

  • ▲ Duck/Vietnam/OIE-3071/2011 (H4N6)

  • ▲ Duck/Vietnam/OIE-4217/2010 (H6N2)

  • ● Chicken/Vietnam/OIE-1611/2012(H9N2)

  • ● Chicken/Vietnam/OIE-2468/2012 (H9N2)

82

  • ▲ Chicken/Vietnam/OIE-0056/2012(H9N2)

  • ● Chicken/Vietnam/OIE-2215/2012 (H5N2)

  • ● Duck/Vietnam/OIE-1287/2012(H5N1)

  • ● Duck/Vietnam/OIE-2202/2012 (H5N1)

  • ▲ Muscovy duck/Vietnam/OIE-559/2011 (H5N1)

Vietnam/1203/2004 (H5N1)

89

H5N1

Vietnam

  • ▲ Muscovy duck/Vietnam/OIE-3312/2011(H5N1)

60

  • ▲ Duck/Vietnam/OIE-3038/2012 (H5N1)

  • ▲ Duck/Vietnam/OIE-3060/2011 (H6N2)

  • ▲ Duck/Vietnam/OIE-3002/2011(H5N1)

  • ▲ Muscovy duck/Vietnam/OIE-3012/2011(H5N1)

64

  • ▲ Muscovy duck/Vietnam/OIE-0043/2012(H5N1)

  • ▲ Muscovy duck/Vietnam/OIE-3314/2011(H5N1)

  • ▲ Duck/Vietnam/OIE-3354/2011(H5N1)

  • ▲ Duck/Vietnam/OIE-3022/2011 (H3N8)

  • ▲ Duck/Vietnam/OIE-3247/2011 (H6N2)

  • ▲ Duck/Vietnam/OIE-3021/2011 (H6N2)

  • ▲ Duck/Vietnam/OIE-3479/2012 (H6N2)

  • ▲ Duck/Vietnam/OIE-3301/2011 (H6N9)

74

  • ▲ Duck/Vietnam/OIE-3304/2011 (H6N2)

70

  • ▲ Duck/Vietnam/OIE-3342/2011 (H6N2)

Hunan491

-like

  • ▲ Duck/Vietnam/OIE-3349/2011 (H6N2)

  • ▲ Duck/Vietnam/OIE-3426/2012 (H3N8)

  • ● Duck/Vietnam/OIE-2533/2011 (H5N1)

  • ● Duck/Vietnam/OIE-1218/2012(H3N6)

69

83

99

  • ● Duck/Vietnam/OIE-1212/2012(H3N2)

  • ● Duck/Vietnam/OIE-2747/2012 (H3N8)

89

  • ● Duck/Vietnam/OIE-2749/2012 (H9N8)

  • ● Duck/Vietnam/OIE-2530/2011 (H4N2)

  • Duck/Hunan/491/2005 (H6N2)

70

Mallard/Jiangxi/8264/2004 (H6N2)

JX8264-like

65

  • ● Duck/Vietnam/OIE-2577/2011 (H3N8)

Duck/Eastern China/51/2002 (H6N2)

  • ▲Duck/Vietnam/OIE-3321/2011 (H6N2)

Goose/Guangdong/1/1996(H5N1)

52

Duck/Hunan/908/2005 (H6N2)

Duck/Hunan/573/2002(H6N2)

Quail/Hong Kong/G1/1997(H9N2)

Teal/Hong Kong/W312/1997 (H6N1)

99

Chicken/Beijing/1/1994 (H9N2)

57

Duck/Hong Kong/Y439/1997(H9N2)

Duck/Hong Kong/Y280/1997(H9N2)

Duck/Shantou/339/2000 (H6N2)

54

90

H6 Group Ⅰ

Wild Duck/Shantou/2853/2003 (H6N2)

90

  • ● Duck/Vietnam/OIE-1213/2012(H6N6)

52

  • ● Duck/Vietnam/OIE-2562/2011 (H6N6)

99

0.01

●NorthVietnam ▲South Vietnam

(Nam Dihn) (Bac Lieu, Ca Mau, and Dong Thap)

Supplement Fig. 2 Okamatsuet al.


H9 china

  • ▲ Duck/Vietnam/OIE-3071/2011 (H4N6)

PA

  • ▲ Duck/Vietnam/OIE-406/2011 (H6N2)

63

  • ▲ Duck/Vietnam/OIE-3426/2012 (H3N8)

  • ▲ Duck/Vietnam/OIE-707/2011 (H11N5)

  • ▲ Duck/Vietnam/OIE-0483/2012(H10N7)

98

  • ▲ Duck/Vietnam/OIE-3231/2011 (H6N2)

  • ▲ Duck/Vietnam/OIE-3287/2011 (H3N6)

  • ▲ Duck/Vietnam/OIE-3225/2011 (H6N2)

  • ▲ Duck/Vietnam/OIE-527/2011 (H6N2)

50

95

60

  • ▲ Duck/Vietnam/OIE-547/2011 (H6N2)

  • ▲ Duck/Vietnam/OIE-0033/2012(H6N2)

Vietnam

87

  • ▲ Duck/Vietnam/OIE-0068/2012(H11N3)

  • ▲ Duck/Vietnam/OIE-535/2011 (H6N2)

  • ▲ Duck/Vietnam/OIE-4217/2010 (H6N2)

  • ▲ Duck/Vietnam/OIE-0155/2012(H4N6)

  • ▲ Duck/Vietnam/OIE-3223/2011 (H4N6)

89

  • ▲ Duck/Vietnam/OIE-4429/2010 (H6N2)

  • ▲ Duck/Vietnam/OIE-3247/2011 (H6N2)

58

60

64

  • ▲ Duck/Vietnam/OIE-0178/2012(H7N1)

57

  • ▲ Duck/Vietnam/OIE-3241/2012 (H3N8)

  • ▲ Duck/Vietnam/OIE-745/2011 (H11N9)

  • ▲ Duck/Vietnam/OIE-3406/2012 (H3N8)

58

  • ▲ Duck/Vietnam/OIE-3469/2012 (H4N6)

Duck/Hong Kong/Y439/1997(H9N2)

Vietnam/1203/2004 (H5N1)

  • ▲ Muscovy duck/Vietnam/OIE-559/2011 (H5N1)

85

  • ▲ Duck/Vietnam/OIE-3354/2011(H5N1)

94

  • ▲ Duck/Vietnam/OIE-3038/2012 (H5N1)

75

  • ▲ Muscovy duck/Vietnam/OIE-0043/2012(H5N1)

63

H5N1 Vietnam

  • ▲ Muscovy duck/Vietnam/OIE-3012/2011(H5N1)

74

  • ▲ Muscovy duck/Vietnam/OIE-3314/2011(H5N1)

  • ▲ Duck/Vietnam/OIE-3060/2011 (H6N2)

68

  • ▲ Duck/Vietnam/OIE-3002/2011(H5N1)

  • ▲ Muscovy duck/Vietnam/OIE-3312/2011(H5N1)

  • ● Duck/Vietnam/OIE-2533/2011 (H5N1)

  • ● Duck/Vietnam/OIE-1287/2012(H5N1)

99

  • ● Duck/Vietnam/OIE-2202/2012 (H5N1)

99

  • ● Chicken/Vietnam/OIE-2215/2012 (H5N2)

Duck/Hunan/491/2005 (H6N2)

Duck/Hunan/573/2002 (H6N2)

  • ▲ Duck/Vietnam/OIE-3022/2011 (H3N8)

67

88

  • ▲ Duck/Vietnam/OIE-3349/2011 (H6N2)

  • ● Duck/Vietnam/OIE-2530/2011 (H4N2)

  • ● Duck/Vietnam/OIE-2747/2012 (H3N8)

  • ● Duck/Vietnam/OIE-1218/2012(H3N6)

93

  • ● Duck/Vietnam/OIE-1212/2012(H3N2)

60

  • ▲ Duck/Vietnam/OIE-404/2011 (H6N2)

Wild bird

  • ▲ Duck/Vietnam/OIE-4439/2010 (H6N6)

  • ▲ Duck/Vietnam/OIE-3061/2012 (H6N2)

  • ▲ Duck/Vietnam/OIE-3479/2012 (H6N2)

97

  • ▲ Duck/Vietnam/OIE-3141/2011 (H6N2)

70

  • ▲ Duck/Vietnam/OIE-3321/2011 (H6N2)

78

  • ▲ Duck/Vietnam/OIE-3021/2011 (H6N2)

  • ▲ Duck/Vietnam/OIE-3301/2011 (H6N9)

  • ▲ Duck/Vietnam/OIE-3304/2011 (H6N2)

  • ▲ Duck/Vietnam/OIE-3342/2011 (H6N2)

Goose/Gunagdong/1/1996(H5N1)

Mallard/Jiangxi/8264/2004 (H6N2)

Duck/Eastern China/51/2002 (H6N2)

99

  • ● Duck/Vietnam/OIE-1213/2012(H6N6)

74

H6 Group Ⅰ

  • ● Duck/Vietnam/OIE-2562/2011(H6N6)

95

Duck/Shantou/339/2000 (H6N2)

Wild Duck/Shantou/2853/2003 (H6N2)

  • ● Chicken/Vietnam/OIE-1611/2012(H9N2)

H9 China

99

  • ● Chicken/Vietnam/OIE-2468/2012 (H9N2)

67

97

  • ● Duck/Vietnam/OIE-2749/2012 (H9N8)

95

  • ▲ Chicken/Vietnam/OIE-0056/2012(H9N2)

Chicken/Beijing/1/1994 (H9N2)

99

Duck/Hong Kong/Y280/1997(H9N2)

Duck/Hunan/908/2005 (H6N2)

  • ● Duck/Vietnam/OIE-2577/2011 (H3N8)

H6 W312

Quail/Hong Kong/G1/1997(H9N2)

54

99

Teal/Hong Kong/W312/1997 (H6N1)

0.02

●NorthVietnam ▲South Vietnam

(Nam Dihn) (Bac Lieu, Ca Mau, and Dong Thap)

Supplement Fig. 3 Okamatsuet al.


H9 china

  • ● Chicken/Vietnam/OIE-2468/2012 (H9N2)

51

  • ● Duck/Vietnam/OIE-2749/2012 (H9N8)

  • ● Chicken/Vietnam/OIE-1611/2012_(H9N2)

NP

  • ▲ Chicken/Vietnam/OIE-0056/2012_(H9N2)

  • ● Duck/Vietnam/OIE-2202/2012 (H5N1)

95

  • ● Chicken/Vietnam/OIE-2215/2012 (H5N2)

Vietnam/1203/2004 (H5N1)

H5N1 Vietnam

  • ● Duck/Vietnam/OIE-2533/2011 (H5N1)

99

  • ● Duck/Vietnam/OIE-1287/2012_(H5N1)

  • ▲ Muscovy duck/Vietnam/OIE-559/2011 (H5N1)

  • ▲ Muscovy duck/Vietnam/OIE-3012/2011_(H5N1)

56

  • ▲ Muscovy duck/Vietnam/OIE-0043/2012_(H5N1)

  • ▲ Muscovy duck/Vietnam/OIE-3314/2011_(H5N1)

  • ▲ Duck/Vietnam/OIE-3354/2011_(H5N1)

  • ▲ Duck/Vietnam/OIE-3038/2012 (H5N1)

  • ▲ Duck/Vietnam/OIE-3002/2011_(H5N1)

66

  • ▲ Muscovy duck/Vietnam/OIE-3312/2011_(H5N1)

Duck/Hong Kong/Y439/1997_(H9N2)

Duck/Hunan/573/2002 (H6N2)

  • ▲ Duck/Vietnam/OIE-4217/2010 (H6N2)

Wild bird I

  • ● Duck/Vietnam/OIE-2747/2012 (H3N8)

  • ▲ Duck/Vietnam/OIE-3479/2012 (H6N2)

57

  • ▲ Duck/Vietnam/OIE-3061/2012 (H6N2)

68

  • ▲ Duck/Vietnam/OIE-3406/2012 (H3N8)

91

Duck/Shantou/339/2000 (H6N2)

Wild Duck/Shantou/2853/2003 (H6N2)

84

  • ● Duck/Vietnam/OIE-2562/2011_(H6N6)

Gs/Gd-like

  • ● Duck/Vietnam/OIE-1213/2012_(H6N6)

Goose/Guangdong/1/1996_(H5N1)

Duck/Hunan/908/2005 (H6N2)

Quail/Hong Kong/G1/1997_(H9N2)

99

Teal/Hong Kong/W312/1997 (H6N1)

Hunan491-like

  • ● Duck/Vietnam/OIE-2530/2011 (H4N2)

Duck/Eastern China/51/2002 (H6N2)

91

Duck/Hunan/491/2005 (H6N2)

  • ● Duck/Vietnam/OIE-2577/2011 (H3N8)

  • ▲ Duck/Vietnam/OIE-3304/2011 (H6N2)

  • ▲ Duck/Vietnam/OIE-3469/2012 (H4N6)

  • ▲ Duck/Vietnam/OIE-3021/2011 (H6N2)

  • ▲ Duck/Vietnam/OIE-3060/2011 (H6N2)

  • ▲ Duck/Vietnam/OIE-3141/2011 (H6N2)

Wild bird II

74

  • ▲ Duck/Vietnam/OIE-3247/2011 (H6N2)

  • ▲ Duck/Vietnam/OIE-3321/2011 (H6N2)

  • ▲ Duck/Vietnam/OIE-3342/2011 (H6N2)

  • ▲ Duck/Vietnam/OIE-3225/2011 (H6N2)

  • ▲ Duck/Vietnam/OIE-3349/2011 (H6N2)

  • ● Duck/Vietnam/OIE-1212/2012_(H3N2)

99

  • ● Duck/Vietnam/OIE-1218/2012_(H3N6)

  • ▲ Duck/Vietnam/OIE-0178/2012_(H7N1)

  • ▲ Duck/Vietnam/OIE-3022/2011 (H3N8)

  • ▲ Duck/Vietnam/OIE-404/2011 (H6N2)

VietnamI

  • ▲ Duck/Vietnam/OIE-3231/2011 (H6N2)

96

  • ▲ Duck/Vietnam/OIE-535/2011 (H6N2)

  • ▲ Duck/Vietnam/OIE-4439/2010 (H6N6)

  • ▲ Duck/Vietnam/OIE-3426/2012 (H3N8)

JX8264-like

Mallard/Jiangxi/8264/2004 (H6N2)

  • ▲ Duck/Vietnam/OIE-4429/2010 (H6N2)

Chicken/Beijing/1/1994 (H9N2)

99

Duck/Hong Kong/Y280/1997_(H9N2)

  • ▲ Duck/Vietnam/OIE-3301/2011 (H6N9)

99

  • ▲ Duck/Vietnam/OIE-0068/2012_(H11N3)

  • ▲ Duck/Vietnam/OIE-745/2011 (H11N9)

75

  • ▲ Duck/Vietnam/OIE-0155/2012_(H4N6)

51

96

  • ▲ Duck/Vietnam/OIE-3241/2012 (H3N8)

  • ▲ Duck/Vietnam/OIE-0033/2012_(H6N2)

55

Vietnam II

  • ▲ Duck/Vietnam/OIE-0483/2012_(H10N7)

  • ▲ Duck/Vietnam/OIE-3287/2011 (H3N6)

  • ▲ Duck/Vietnam/OIE-707/2011 (H11N5)

90

  • ▲ Duck/Vietnam/OIE-406/2011 (H6N2)

58

  • ▲ Duck/Vietnam/OIE-3071/2011 (H4N6)

  • ▲ Duck/Vietnam/OIE-3223/2011 (H4N6)

  • ▲ Duck/Vietnam/OIE-527/2011 (H6N2)

55

80

  • ▲ Duck/Vietnam/OIE-547/2011 (H6N2)

0.01

●NorthVietnam ▲South Vietnam

(Nam Dihn) (Bac Lieu, Ca Mau, and Dong Thap)

Supplement Fig. 4 Okamatsuet al.


H9 china

99

  • ▲ Duck/Vietnam/OIE-3231/2011 (H6N2)

57

M

54

  • ▲ Duck/Vietnam/OIE-3287/2011 (H3N6)

  • ▲ Duck/Vietnam/OIE-3406/2012 (H3N8)

82

  • ▲ Duck/Vietnam/OIE-0155/2012(H4N6)

  • ▲ Duck/Vietnam/OIE-707/2011 (H11N5)

  • ▲ Duck/Vietnam/OIE-3469/2012 (H4N6)

  • ▲ Duck/Vietnam/OIE-3426/2012 (H3N8)

  • ▲ Duck/Vietnam/OIE-3022/2011 (H3N8)

63

  • ▲ Duck/Vietnam/OIE-0068/2012(H11N3)

58

  • ▲ Duck/Vietnam/OIE-0033/2012(H6N2)

  • ▲ Duck/Vietnam/OIE-3225/2011 (H6N2)

Vietnam

92

  • ▲ Duck/Vietnam/OIE-535/2011 (H6N2)

94

  • ▲ Duck/Vietnam/OIE-527/2011 (H6N2)

98

  • ▲ Duck/Vietnam/OIE-547/2011 (H6N2)

  • ▲ Duck/Vietnam/OIE-745/2011 (H11N9)

  • ▲ Duck/Vietnam/OIE-3223/2011 (H4N6)

73

  • ▲ Duck/Vietnam/OIE-0483/2012(H10N7)

97

  • ▲ Duck/Vietnam/OIE-3071/2011 (H4N6)

83

  • ▲ Duck/Vietnam/OIE-0178/2012(H7N1)

65

  • ▲ Duck/Vietnam/OIE-4217/2010 (H6N2)

  • ▲ Duck/Vietnam/OIE-404/2011 (H6N2)

95

  • ▲ Duck/Vietnam/OIE-406/2011 (H6N2)

98

  • ▲ Duck/Vietnam/OIE-3241/2012 (H3N8)

Goose/Guangdong/1/1996(H5N1)

Vietnam/1203/2004 (H5N1)

  • ● Duck/Vietnam/OIE-2533/2011 (H5N1)

87

99

  • ● Duck/Vietnam/OIE-1287/2012(H5N1)

95

99

  • ● Duck/Vietnam/OIE-2202/2012 (H5N1)

  • ● Chicken/Vietnam/OIE-2215/2012 (H5N2)

99

H5N1 Vietnam

  • ▲ Muscovy duck/Vietnam/OIE-559/2011 (H5N1)

95

  • ▲ Muscovy duck/Vietnam/OIE-3012/2011(H5N1)

  • ▲ Muscovy duck/Vietnam/OIE-3314/2011(H5N1)

85

  • ▲ Duck/Vietnam/OIE-3349/2011 (H6N2)

  • ▲ Duck/Vietnam/OIE-3002/2011(H5N1)

78

  • ▲ Muscovy duck/Vietnam/OIE-3312/2011(H5N1)

  • ▲ Duck/Vietnam/OIE-3354/2011(H5N1)

  • ▲ Muscovy duck/Vietnam/OIE-0043/2012(H5N1)

54

65

  • ▲ Duck/Vietnam/OIE-3038/2012 (H5N1)

Mallard/Jiangxi/8264/2004 (H6N2)

Duck/Hunan/573/2002 (H6N2)

JX8264-like

88

Duck/Hunan/491/2005 (H6N2)

98

  • ● Duck/Vietnam/OIE-2530/2011 (H4N2)

  • ● Duck/Vietnam/OIE-1218/2012(H3N6)

99

Duck/Hong Kong/Y439/1997(H9N2)

  • ● Duck/Vietnam/OIE-2577/2011 (H3N8)

Wild bird

Duck/Eastern China/51/2002 (H6N2)

  • ● Duck/Vietnam/OIE-1212/2012(H3N2)

98

  • ● Duck/Vietnam/OIE-2747/2012 (H3N8)

99

  • ● Duck/Vietnam/OIE-2749/2012 (H9N8)

99

Wild Duck/Shantou/2853/2003 (H6N2)

Duck/Shantou/339/2000 (H6N2)

99

Duck/Hunan/908/2005 (H6N2)

83

  • ● Duck/Vietnam/OIE-2562/2011(H6N6)

99

  • ● Duck/Vietnam/OIE-1213/2012(H6N6)

61

  • ▲ Duck/Vietnam/OIE-4429/2010 (H6N2)

92

89

  • ▲ Duck/Vietnam/OIE-4439/2010 (H6N6)

  • ▲ Duck/Vietnam/OIE-3479/2012 (H6N2)

H6 Group Ⅰ

99

  • ▲ Duck/Vietnam/OIE-3141/2011 (H6N2)

  • ▲ Duck/Vietnam/OIE-3321/2011 (H6N2)

70

  • ▲ Duck/Vietnam/OIE-3301/2011 (H6N9)

  • ▲ Duck/Vietnam/OIE-3304/2011 (H6N2)

  • ▲ Duck/Vietnam/OIE-3021/2011 (H6N2)

  • ▲ Duck/Vietnam/OIE-3060/2011 (H6N2)

  • ▲ Duck/Vietnam/OIE-3247/2011 (H6N2)

54

  • ▲ Duck/Vietnam/OIE-3342/2011 (H6N2)

  • ▲ Duck/Vietnam/OIE-3061/2012 (H6N2)

99

Chicken/Beijing/1/1994 (H9N2)

Duck/Hong Kong/Y280/1997(H9N2)

Qail/Hong Kong/G1/1997(H9N2)

99

Teal/Hong Kong/W312/1997 (H6N1)

H6 W312

98

  • ▲ Chicken/Vietnam/OIE-0056/2012(H9N2)

  • ● Chicken/Vietnam/OIE-1611/2012(H9N2)

99

99

  • ● Chicken/Vietnam/OIE-2468/2012 (H9N2)

0.01

●NorthVietnam ▲South Vietnam

(Nam Dihn) (Bac Lieu, Ca Mau, and Dong Thap)

Supplement Fig. 5 Okamatsuet al.


H9 china

74

  • ▲ Duck/Vietnam/OIE-3231/2011 (H6N2)

69

  • ▲ Duck/Vietnam/OIE-3287/2011 (H3N6)

  • ▲ Duck/Vietnam/OIE-3071/2011 (H4N6)

NS

82

  • ▲ Duck/Vietnam/OIE-745/2011 (H11N9)

66

  • ▲ Duck/Vietnam/OIE-3223/2011 (H4N6)

  • ▲ Duck/Vietnam/OIE-3022/2011 (H3N8)

  • ▲ Duck/Vietnam/OIE-3241/2012 (H3N8)

93

  • ▲ Duck/Vietnam/OIE-3406/2012 (H3N8)

JX8264-like

68

  • ▲ Duck/Vietnam/OIE-3426/2012 (H3N8)

  • ● Duck/Vietnam/OIE-1218/2012(H3N6)

96

  • ● Duck/Vietnam/OIE-1212/2012(H3N2)

Duck/Eastern China/51/2002 (H6N2)

Duck/Hunan/573/2002(H6N2)

Duck/Hunan/491/2005 (H6N2)

Mallard/Jiangxi/8264/2004 (H6N2)

  • ▲ Duck/Vietnam/OIE-0155/2012(H4N6)

  • ▲ Duck/Vietnam/OIE-3469/2012 (H4N6)

Wild bird

  • ● Duck/Vietnam/OIE-2530/2011 (H4N2)

  • ● Duck/Vietnam/OIE-2747/2012 (H3N8)

86

  • ● Duck/Vietnam/OIE-2533/2011 (H5N1)

86

  • ● Duck/Vietnam/OIE-1287/2012(H5N1)

  • ● Duck/Vietnam/OIE-2202/2012 (H5N1)

Vietnam/1203/2004 (H5N1)

H5N1 Vietnam

  • ▲ Muscovy duck/Vietnam/OIE-559/2011 (H5N1)

85

  • ▲ Muscovy duck/Vietnam/OIE-3012/2011(H5N1)

  • ▲ Muscovy duck/Vietnam/OIE-3314/2011(H5N1)

67

  • ▲ Duck/Vietnam/OIE-3002/2011(H5N1)

  • ▲ Muscovy duck/Vietnam/OIE-3312/2011(H5N1)

77

  • ▲ Duck/Vietnam/OIE-3354/2011(H5N1)

62

  • ▲ Muscovy duck/Vietnam/OIE-0043/2012(H5N1)

70

  • ▲ Duck/Vietnam/OIE-3038/2012 (H5N1)

  • ● Duck/Vietnam/OIE-2562/2011(H6N6)

57

H6 Group I

99

  • ● Duck/Vietnam/OIE-1213/2012(H6N6)

Duck/Shantou/339/2000 (H6N2)

Wild Duck/Shantou/2853/2003 (H6N2)

Duck/Hunan/908/2005 (H6N2)

  • ▲ Duck/Vietnam/OIE-3225/2011 (H6N2)

61

  • ▲ Duck/Vietnam/OIE-0033/2012(H6N2)

  • ▲ Duck/Vietnam/OIE-404/2011 (H6N2)

88

  • ▲ Duck/Vietnam/OIE-406/2011 (H6N2)

55

  • ▲ Duck/Vietnam/OIE-4217/2010 (H6N2)

  • ▲ Duck/Vietnam/OIE-4429/2010 (H6N2)

62

  • ▲ Duck/Vietnam/OIE-4439/2010 (H6N6)

89

  • ▲ Duck/Vietnam/OIE-535/2011 (H6N2)

  • ▲ Duck/Vietnam/OIE-3342/2011 (H6N2)

  • ▲ Duck/Vietnam/OIE-3301/2011 (H6N9)

Vietnam

  • ▲ Duck/Vietnam/OIE-3141/2011 (H6N2)

  • ▲ Duck/Vietnam/OIE-3349/2011 (H6N2)

  • ▲ Duck/Vietnam/OIE-3321/2011 (H6N2)

  • ▲ Duck/Vietnam/OIE-3304/2011 (H6N2)

79

  • ▲ Duck/Vietnam/OIE-527/2011 (H6N2)

83

  • ▲ Duck/Vietnam/OIE-547/2011 (H6N2)

  • ▲ Duck/Vietnam/OIE-3061/2012 (H6N2)

  • ▲ Duck/Vietnam/OIE-3479/2012 (H6N2)

Allele A

  • ▲ Duck/Vietnam/OIE-3021/2011 (H6N2)

50

  • ▲ Duck/Vietnam/OIE-3060/2011 (H6N2)

  • ▲ Duck/Vietnam/OIE-3247/2011 (H6N2)

Duck/Hong Kong/Y439/1997(H9N2)

Quail/Hong Kong/G1/1997(H9N2)

99

Teal/Hong Kong/W312/1997 (H6N1)

Chicken/Beijing/1/1994 (H9N2)

Duck/Hong Kong/Y280/1997(H9N2)

76

76

  • ▲ Chicken/Vietnam/OIE-0056/2012(H9N2)

  • ● Chicken/Vietnam/OIE-1611/2012(H9N2)

H9 China

  • ● Chicken/Vietnam/OIE-2468/2012 (H9N2)

76

  • ● Chicken/Vietnam/OIE-2215/2012 (H5N2)

83

  • ● Duck/Vietnam/OIE-2749/2012 (H9N8)

Allele B

Goose/Guangdong/1/1996(H5N1)

  • ● Duck/Vietnam/OIE-2577/2011 (H3N8)

54

  • ▲ Duck/Vietnam/OIE-707/2011 (H11N5)

99

  • ▲ Duck/Vietnam/OIE-0483/2012(H10N7)

74

  • ▲ Duck/Vietnam/OIE-0068/2012(H11N3)

82

  • ▲ Duck/Vietnam/OIE-0178/2012(H7N1)

0.05

●NorthVietnam ▲South Vietnam

(Nam Dihn) (Bac Lieu, Ca Mau, and Dong Thap)

Supplement Fig. 6 Okamatsuet al.


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